Aspergillus fischeri: NFIA_109060
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Entry
NFIA_109060 CDS
T01070
Name
(RefSeq) ATP dependent RNA helicase (Dob1), putative
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nfi
Aspergillus fischeri
Pathway
nfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NFIA_109060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfi03019
]
NFIA_109060
03041 Spliceosome [BR:
nfi03041
]
NFIA_109060
03009 Ribosome biogenesis [BR:
nfi03009
]
NFIA_109060
03016 Transfer RNA biogenesis [BR:
nfi03016
]
NFIA_109060
Enzymes [BR:
nfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NFIA_109060
Messenger RNA biogenesis [BR:
nfi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
NFIA_109060
Spliceosome [BR:
nfi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
NFIA_109060
Complex C
U4/U6.U5 tri-SnRNP related factors
NFIA_109060
Ribosome biogenesis [BR:
nfi03009
]
Eukaryotic type
Pre-60S particles
Helicases
NFIA_109060
Transfer RNA biogenesis [BR:
nfi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
NFIA_109060
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
ATPase_2
nSTAND3
AAA_16
AAA_22
APG6_N
Motif
Other DBs
NCBI-GeneID:
4593401
NCBI-ProteinID:
XP_001267310
UniProt:
A1CXR1
LinkDB
All DBs
Position
Unknown
AA seq
1082 aa
AA seq
DB search
MDELFDVFEDHPQAAAKVTDAAPKRPKKDKSKKRQVNGDVKENGAATESKEDIEIPDAPA
GELADGEQAEAPATENNEQQPDAKRPRLEKEPQPVLADEFETAQEREVAASAGLQAAKET
TSVKLSHQVRHQVAIPPNYPYVPISQHKPPENPARVWPFTLDPFQQVAVASIQREESVLV
SAHTSAGKTVVAEYAIAQSLKNNQRVIYTSPIKALSNQKYREFAAEFGDVGLMTGDVTIN
PTATCLVMTTEILRSMLYRGSEIMREVAWVIFDEIHYMRDAIRGVVWEETIILLPDKVRY
VFLSATIPNAMQFAEWIVKMHNQPCHVVYTDFRPTPLQHYFFPAGGEGIFLVVDEKGAFR
EENFQKAMGSIADKKGDDPSDAMAKRKGKGKDKRLNKGGNEGPSDIYKIVKMIMLKNLNP
VIVFSFSKRECEACALKMSTLAFNDDSEKEMVSKVFNSAIEMLSEEDRNLPQIQNILPLL
RRGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGFS
QRWVTPSEFVQMSGRAGRRGLDDRGIVIMMVGEEMDPAVAKEIVRGEQDRLNSAFHLGYN
MILNLMRVEGISPEFMLERCFYQFQNTAGVADLEKQLQEFEEKRANMTISDEGTIREYYE
LRTQLDKFADDIQAVISHPDYSLTFMSPGRLVHIKHKDKDFGWGVVVNYKQRKPPKNSTE
EIPRDKRYVVDVLLNIAEGPSVATKTFEELPSGVRPVKEGDNSRMEVVPVLTQCIRAISH
VRMKLPKDLNPKEAKNGVKKSLAEIHKRFPDGIATLDPIEDMNIKDESFKKLLRKVEVLE
SRLLSNPLHNSPRLPELYEQYSEKVELGTKIKETKKKISEAMSIMQLDELKCRKRVLRRF
GFINEAEVVQLKARVACEISTGDELMLSELLFNGFFNKLTPEQIAAVLSVFVFEEKSKET
PALTRDELAKPLKEIQAQARIVAKVSQESKLAVNEEEYVNSFHWELMEVIYEWANGKSFA
DICGMTDVYEGSLIRVFRRLEECLRQMAQASKVMGNEELESKFEEALTKVRRDIVAAQSL
YL
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atggatgaactctttgatgttttcgaagaccaccctcaagcggcagcgaaggtcaccgat
gccgcacccaagcgacccaagaaggacaagagcaagaagcgtcaggtaaatggcgatgtg
aaggaaaatggcgcagcgacagagagcaaggaggatattgagattcccgatgcacctgct
ggagaactcgcggatggggaacaggctgaagcgcctgcgaccgagaacaacgagcaacaa
cccgacgcgaagcgtccgcgactggagaaggaaccgcagcctgtactagcagacgaattc
gagacggcgcaggagcgcgaggttgcagcatctgcaggtctacaagccgcaaaggaaaca
acttcggtcaagttgtcgcaccaggttcggcatcaagtcgccattccgcccaactatcca
tacgtaccaatttcgcaacacaagccgcctgagaaccctgcgagggtatggccgttcacg
ctcgatccgttccagcaagtcgccgttgcatccatacagagagaggaaagtgttctggtc
tcggctcataccagtgccggtaagacggtagttgcggagtacgccatcgcgcaaagtttg
aagaacaaccaaagagtcatctacacaagtcctatcaaggctttaagtaaccagaaatac
cgagagtttgcggcagaatttggtgatgttggtttaatgacgggagatgtcactatcaac
ccaacagcgacctgtctggtcatgacaacagagattctcaggtccatgttgtatcgcggc
tcggaaattatgcgcgaagttgcatgggtcatttttgacgagattcattacatgcgtgat
gccattcgaggcgtggtttgggaagagaccatcattttgttaccggacaaggtcagatat
gtattcttgtcggcgacaatccccaatgctatgcagttcgccgaatggatcgtcaagatg
cacaaccaaccctgtcacgtcgtatatactgatttcagacccactcctctacaacactac
ttcttccccgctggtggcgaggggatcttcctcgtcgtcgacgaaaagggagcgttccgg
gaagagaacttccaaaaggcaatgggcagcatcgcagacaagaagggagatgacccgtcc
gatgctatggccaagaggaagggaaagggtaaagacaagaggttgaataagggcgggaat
gaaggcccgagcgacatttacaagattgtgaaaatgatcatgctgaagaacctcaatccc
gtcattgtcttcagtttcagcaaacgtgaatgcgaggcatgcgctctcaaaatgagtact
ttggctttcaatgatgattcagagaaggaaatggtatccaaggttttcaacagcgctatc
gagatgctttccgaagaagacaggaacctgcctcaaattcaaaacattctacctctgctt
cggagaggtatcggtgtccatcattctgggttgcttcctattctcaaagaaaccattgag
attctcttccaagaaggacttatcaaggtcctcttcgcgacggaaacattctcaatcggt
ctgaacatgcccgcgaagactgtggttttcacgagcgtccggaaatttgacggttttagc
caacgctgggtaacgccgtccgaattcgtccagatgtctggccgagctggtcgaagaggt
cttgatgaccgcggtatcgtgatcatgatggttggtgaagagatggatcctgcggtggcg
aaggagattgtgcgcggagagcaggataggctcaactcagctttccatttgggttacaat
atgatactgaacctgatgcgtgtggaaggcatctcgcccgagttcatgctcgagagatgc
ttctaccaattccaaaacacggccggtgtcgccgaccttgagaaacaactccaggaattt
gaagagaagagggccaacatgaccatttctgacgaaggcaccattcgcgaatactacgaa
ctaaggacgcagctcgacaagtttgcagatgacatacaagcagtcatcagccaccccgat
tattctttgacctttatgtcaccaggtcgtttagtgcacatcaagcacaaagacaaagac
ttcggatggggtgtggttgtcaattacaaacaacggaagccaccaaagaattcaacggag
gagattcctcgtgacaagagatatgtcgtcgatgttctgctcaatattgccgaagggccg
tctgtggccacaaagacgtttgaggagttaccgtcgggagtcaggccagtgaaagaaggg
gacaactctcggatggaggtcgttccagtccttacccaatgcatccgtgccatctcgcat
gtacgcatgaagcttcccaaggacctgaacccaaaagaggcgaaaaacggggtcaagaaa
tctcttgctgagatccataagcggttccctgatggcattgctacacttgacccgattgag
gatatgaatatcaaggacgaaagtttcaagaaactactcaggaaagtggaggtccttgag
tctcgtttgctttccaacccactacacaactcaccccgcctaccagaactttacgagcaa
tattccgagaaggtggagttgggaacgaagattaaggagacgaagaagaagatttccgag
gcgatgtccatcatgcagcttgatgagctcaagtgccgtaagcgtgtacttcgtcggttt
ggtttcatcaacgaggccgaagtcgtgcagttgaaggcacgagtcgcctgcgagatcagc
acgggagacgagctcatgctcagcgagcttcttttcaacggtttcttcaacaaacttact
ccggaacaaatcgctgctgtattgagtgtattcgtttttgaggagaagtccaaggaaact
cctgctctcacgcgggacgagctggcgaagcccctaaaggaaatccaagcgcaggcccgg
atagttgccaaggtctctcaagaatccaagctggccgtcaacgaggaggaatatgtaaac
agtttccactgggagcttatggaggtcatttacgaatgggcgaacggcaaatcctttgct
gatatttgtggaatgaccgatgtttatgaaggatccttgatccgggtcttccgtcgattg
gaggagtgtctccgtcagatggcgcaagcctccaaggttatgggtaacgaggaactcgag
agcaaattcgaggaagctctgactaaggtgcgcagggacattgtggccgcacagtccctt
tacttgtaa
DBGET
integrated database retrieval system
