KEGG   Aspergillus fischeri: NFIA_115000
Entry
NFIA_115000       CDS       T01070                                 
Name
(RefSeq) U5 snRNP complex subunit, putative
  KO
K12857  Prp8 binding protein
Organism
nfi  Aspergillus fischeri
Pathway
nfi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nfi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    NFIA_115000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:nfi03041]
    NFIA_115000
Spliceosome [BR:nfi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    NFIA_115000
 Complex C
   U5 SnRNP specific factors
    NFIA_115000
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_Vps41 WD40_RFWD3 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N WD40_like Beta-prop_DCAF12 PEP5_VPS11_N
Other DBs
NCBI-GeneID: 4589500
NCBI-ProteinID: XP_001262864
UniProt: A1D9A6
LinkDB
Position
Unknown
AA seq 359 aa
MSGEKRPAQAAFGSSNQLVVKRKKSDGDINAGTAVVKSSSQNGTLVQAIPRTSGLDAPIM
ELTGHSGEVFTVRFDPTAQHIASGSMDRSILLWNTYGQCENYGVLTGHRGAILDLQWSRD
SRAIFSASADMTLASWDLETGQRIRRHVGHEEIINCLDISKRGQELLVSASDDGCIGIWD
PRQKHAIEYLETELPITAVALSEAGNEIYSGGIDNTIHVWDLRKKSVVYSMAGHTDTVTS
LQISPDSQTLLSNSHDSTVRTWDIRPFAPTNRHIRTYDGAPMGLEKNLIRASWDPKGEKI
AAGSGDRSVVVWDFRTGKLLYKLPGHKGTVNDVRFSPNNEPIIVSGSSDRTLMLGELGK
NT seq 1080 nt   +upstreamnt  +downstreamnt
atgtcgggagagaaaagaccagcacaggcagcctttggctcctcaaatcaacttgtcgtc
aaacgaaagaagtccgacggggatatcaatgctgggacggctgttgtgaaatcctcatct
cagaatggaactcttgtgcaagcaattcctcgcaccagcgggcttgacgcccccattatg
gagctgacaggtcattctggcgaggtcttcaccgtgcgatttgaccccacagcacagcac
attgcgtctggctcgatggatcggtctatattactttggaacacatatgggcaatgcgag
aattatggcgttctgaccggccatcgaggggcgatcctggatttgcaatggtcgagagat
tcacgggcgattttttccgcatcggcggatatgacactagcgagctgggacttggaaact
gggcagagaatacgacgccacgttgggcacgaggagatcataaattgtcttgacatcagc
aaacgaggccaggagctcctggttagcgcgagcgacgacggttgcatagggatttgggac
ccacgacaaaagcatgctattgaatacctcgaaacagagcttcccatcaccgcagtagct
ctgtcggaagcaggaaacgaaatctacagtggaggcattgataatacaattcacgtctgg
gacttgcgaaagaagtctgttgtgtactccatggctggccatacggacaccgtcacgtcc
ctgcagatttcgccggactcgcagaccctgctttccaactctcatgactcaacggtgcgc
acttgggatattcggcccttcgctcccacaaatcgacacatcagaacatacgatggtgcc
ccgatggggctggagaagaacctgatcagggcaagctgggatccaaagggtgaaaagatt
gcagctggtagcggcgatcgaagtgttgtggtctgggacttcaggactgggaaacttcta
tataagcttcctggacacaaaggcaccgtcaacgacgtgcgcttctcgccgaataatgag
cccataattgtatctggatcgtcagaccggacgctcatgcttggtgagctcggaaaataa

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