Nostoc flagelliforme: COO91_02442
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Entry
COO91_02442 CDS
T05266
Name
(GenBank) mfd, transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nfl
Nostoc flagelliforme
Pathway
nfl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
COO91_02442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfl03400
]
COO91_02442
Enzymes [BR:
nfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
COO91_02442
DNA repair and recombination proteins [BR:
nfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
COO91_02442
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
UB2H
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AUB36527
UniProt:
A0A2K8SM86
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All DBs
Position
2277050..2280682
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AA seq
1210 aa
AA seq
DB search
MSFSSIVRALARSPLTTEFISKLNRQQELRLNGIPRLPKGLVASALAQSQGKDLFVVCAT
LEEAGRVYAQLEAMGWQTVHFYPTSEASPYEPFDPETEMSWGQMQVLADLLKNQESLVTC
TERSRSISQLSLETNQGQRINDIDASAASRRVGQMTNLAIVATQGALQPHLPPPEAFGQF
CLTLKRGMELDLNGFSEKITILGYERVPLVETEGQWSRRGDIVDVYPVSSEFPVRLEWFG
DEIEQMREFDPATQRSALDKVDQLILTPTSFAPIVMAALKNNSELGVISYELNSDSELST
ENSSLLEGSRRFLRLAFEQPASLLNYLSENTLIAIDEPEQCHAHSDRWVENAEEQWGIGN
RELGIGNGEESTSSPLALPKIHRSFDECLADVAKFKTLYLSELSEENDGINLASRPVPVT
PHQFAKLAETIRQERDRNFSIWLLSAQPSRSVSLLQEHDCPAQFIPNPRDYQAIDKLQIN
HTPIALKYSGLAELEGFILPTYRIVIVTDREFFGQHSLATPGYIRKRHKATSKQVDPNKL
RPGDYVVHRNHGVGKFVKLESLTINNETRDYLVVQYADGLLRVAADQVGALSRFRAAGDK
APELNRMTGKAWENTKNKVRKAIKKLAVDLLKLYAARSQQQGFSFPGDMPWQEELEDSFP
YQPTTDQLKAVQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAVFKAVTAGKQVALLAPT
TILTQQHYHTLKERFAPYPVNVGLLNRFRSAEERRDIQKRLATGELDVVIGTHQLLGKGV
TFRDLGLLVVDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRTLYMSLSGIREMSLITT
PPPTRRPIKTHLSPINSESIRTAIRQELDRGGQVFYVVPRVDGIEETTANLREVLPGARF
AIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTILIEDAHRFGLAQLYQ
LRGRVGRAGIQAHAWLFYPKQRQLSDAARQRLRAIQEFTQLGSGYQLAMRDMEIRGVGNL
LGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPQVEDTQIDLNLTAFIPADYITDLDQK
MSAYRAVATAKSKSELKQIAAEWSDRYGTLPVPANQLLRVMELKQLAKKLGFSRIKPENK
QHVVLETPMEEPAWNLLVANLPDNLKTRFVYSPGKVTVRGLGVFKADQQLQNLIDAFGRM
QGAIPEVAVV
NT seq
3633 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttcttctattgtgcgtgccttagcgcgatcgccacttaccactgaatttatt
tctaagttaaaccgacaacaagaattgcggttaaatggcattcctcgactacccaagggt
ttggtggcttcggcattggcccaatctcagggcaaggatttgtttgtggtttgcgccact
ctggaagaagctggacgcgtttacgcacaactggaggcaatgggatggcagacagtacat
ttttaccccacctctgaggcttctccctacgaaccttttgacccggaaactgagatgagt
tgggggcaaatgcaggtattggcagatttgctcaaaaatcaagagtcattagtcacttgt
actgagcgtagtcgaagtattagtcagttgtcattagaaacaaaccaaggacaaaggata
aatgacatagacgcttctgcggcttcccgcagggtaggacaaatgacaaatttagcaatc
gttgctactcaaggggcgctgcaacctcacttaccaccaccagaagcttttgggcaattc
tgtcttaccttaaagcgggggatggaattagacttgaatggcttcagtgagaaaataact
attctgggatacgaacgagtacctctggtggaaacagaaggacagtggagccgacggggc
gatattgttgatgtgtacccagtttcatctgagtttccagtccggctggaatggtttggt
gatgaaatcgagcaaatgcgggaatttgacccagcaacccaacgttccgccctggacaaa
gttgatcagttaattcttacccccactagctttgctcccatcgtcatggcggcactgaag
aataattctgagttaggagttataagttatgagttaaattctgactcagaacttagcact
gagaactcatcactcttggagggtagtcgtcgctttttaaggttggctttcgagcaacca
gcgtccctgctaaactacttatcagaaaataccctgattgccattgatgagccagaacag
tgtcatgctcatagcgatcgctgggtagaaaatgccgaagaacagtggggaatagggaat
agggaattgggaatagggaatggggaagaatctacctctagtcccttagcattgccgaaa
attcatcggtcgtttgatgaatgtttggctgatgttgccaaatttaaaaccttatattta
tcggaactctcagaggaaaatgatgggattaatcttgccagccgacctgttcctgtcacg
ccgcaccagtttgctaaactagctgaaactatccgccaagaacgcgatcgcaatttctct
atctggttgctttctgctcaaccttcccgttctgtctcgctgttgcaagaacatgactgt
ccggctcagtttatcccgaatccccgcgactaccaagcgatagataagctgcaaataaac
catactcccatagccctaaaatattctggtctggcggaactagaaggttttatcctgcct
acttaccgaatagtaatcgtcacagatcgggaattttttgggcagcattctttggcgact
cccggctatatccgcaagcgtcacaaagctacttctaaacaagttgatcccaataagctg
cgtccaggcgattatgtggttcacagaaatcatggtgttggtaaatttgtcaagctggaa
agtttgacgattaataatgaaacccgtgattatttggtggtgcagtatgctgatgggtta
ttaagagtcgcagctgatcaagtaggtgctttatcccggttccgcgccgcaggtgataaa
gcaccagaacttaatcggatgaccggtaaagcttgggaaaataccaagaataaagtccgc
aaagcgattaaaaaattggcggtggacttgttgaaactgtatgcagcgcgatcgcaacaa
caaggttttagctttccaggtgatatgccttggcaagaggaattggaagattctttcccc
taccaacccacaacagatcaactcaaagctgtacaagatgtgaaacgcgacatggaaagc
gatcgcccaatggatcgcttagtttgtggcgatgtcggttttggaaagacggaagtggcg
attcgtgctgtttttaaagcagtcaccgccggtaaacaagtggcactccttgcgccgaca
actattttaacacagcagcattaccatacactcaaagaacgttttgctccttacccggta
aatgtcggtttgctcaaccgctttcgttctgctgaagaacgccgcgatattcaaaagcga
ttggcaacgggtgaattagatgtagtgattggcacgcaccaacttttaggtaaaggtgtg
acattccgggatttaggactgttggtagtggatgaagaacagcgatttggggtaaatcag
aaggagaaaattaaaagcttgaaaactcaagtggacgtgcttaccctctccgctactccc
attccccggactttgtatatgtccttgtcgggaattcgggagatgagtttgattactaca
ccacccccaaccagacgcccgattaaaacccatctgtcaccgataaattccgaaagtatc
cgcactgcaattcgtcaagaattagacagaggcggccaggtattttatgtagttccacga
gtagatggaattgaagagacaacagccaatttacgagaagtgttaccgggagctaggttt
gcgatcgcccacggtcaaatggatgaaagcgagttagaatccaccatgctcaccttcagt
aatggcgatgcagacatcctcgtttgtacgacaattattgaatctggcttagatattcca
cgagtcaacaccattttaattgaagatgctcatcgctttggattggcacaactgtatcaa
ttacgcggtcgtgtggggcgtgcaggtatccaagctcatgcttggttattttatccaaag
caacggcaattatctgatgcggctcgacaacgtttacgagcgattcaggaatttactcag
ctaggttctgggtatcagctagcgatgcgcgacatggaaatcagaggcgtgggtaacttg
ctaggtgcagaacaatccggtcaaatggatgccatcggttttgatttatacatggaaatg
ctagaagaagcaattcgggaaatccgaggacaagaaattccgcaagtggaggatacccag
attgaccttaacctgacggcgtttattccggcagattacatcaccgatttggatcaaaag
atgagtgcataccgagcggtggctacagctaaatctaaatcagaattaaaacagattgca
gccgagtggagcgatcgctatggtactttacctgtccctgcaaatcaacttttgcgagtc
atggaactcaaacagttagcaaaaaaactcggatttagccggattaaaccagaaaacaag
cagcacgtcgttttagaaacgccgatggaagaacccgcttggaacttgttggtggcgaat
ttaccagacaatctgaagacgcgctttgtgtattctccggggaaagtgacagtacgcgga
ttaggagtttttaaagcagatcaacaattgcagaatttgattgatgctttcgggagaatg
caaggtgcgattccagaggtggctgttgtttga
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