Nostoc flagelliforme: COO91_03995
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Entry
COO91_03995 CDS
T05266
Name
(GenBank) rpoC, DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nfl
Nostoc flagelliforme
Pathway
nfl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nfl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
COO91_03995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nfl03021
]
COO91_03995
03400 DNA repair and recombination proteins [BR:
nfl03400
]
COO91_03995
Enzymes [BR:
nfl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
COO91_03995
Transcription machinery [BR:
nfl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
COO91_03995
DNA repair and recombination proteins [BR:
nfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
COO91_03995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
RnfC_N
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AUB38038
UniProt:
A0A2K8SRL8
LinkDB
All DBs
Position
3710635..3714681
Genome browser
AA seq
1348 aa
AA seq
DB search
MTNEKMIFRNRVVDKGQLRNLISWAFTHYGTARTAVMADKLKDLGFRYATKAGVSISVDD
LMIPPTKRLLLDAAEEEIRATETRYQRGEITEVERFQKVIDTWNGTSEALKDEVVVHFKK
TNPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYIIS
SYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIREFDCGTTRGIPIRPMTEGAKTLIPL
GTRLMGRVIGEDVLHPVTKEVIAPRNTPVTEDLAKKIEKSGVAEVMLRSPLTCEAARSVC
QHCYGWSLAHAKMVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVAQQVRSKIDG
TVKLPRKLKTRTYRTRHGEDALYVEANGIMLLEPTKVGDVTPENQEVHLTQGSTLYVFDG
NKVKQGQLLAEVALGGRTTRTNTEKAVKDVASDLAGEVQFAEVVPEQKTDRQGNTTTTAA
RGGLIWILSGEVYNLPPGAELVVKNGDAIASNGVLAETKLASLHGGVVRLPEATPGKSTR
EIEIITASVVLDQATVTVQSSQGRNNYLVSTGNNQVFNLRATPGTKVQNGQVVAELIDDR
YRTTTGGFLKFAGVEVQKKGKAKLGYEVVQGGTLLWIPEESHEVNKDISLLLVEDGQFVE
AGTEVVKDIFCQNSGVIEVTQKNDILREVVVKPGELLMVDDPESVIGRDNTFIQPGEEFQ
GNVATELRYIQYVETPEGPALLSRPVVEFAVPDNPDVPSTTSVSQQTGRSIQLRAVQRLP
YKDSERVKSVEGVELLRTQLVLEIEQEGEQDHNASPLAADIELVEDTEDPEVQRLQLVIL
ESLVIRRDITADATQGSTQTTLEVHDGLTIAPGAVVARTQILCKEGGEVRGVRKGTENVR
RCLVLRDADRLTINTSTQPKVKVGDLLVEGTEVAPGVFAPESGQVVDIKSATAASGEESA
LSTKNYVVTTRIGRPYRVSPGAVLQIEDGDLVQRGDNLVLLVFERAKTGDIIQGLPRIEE
LLEARKPKEACILCRRGGEVKVVYAESGDEAIAIKVVESNGVVTDYPLGPGQNLIVPDGS
FVLAGQPLTDGPSNPHEILEIFFSLGSEDGIYACASHALQKVQSFLVNEVQMVYQSQGID
ISDKHIEVIVRQMTNKVRIDDGGDTTMLPGELVELRQVEQVNEAMAITGGARAQYTPVLL
GITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGYNTYD
EPGAIDDYAAEITSSVLDEVDDPLDMVLDDRTARTYNLDSPTLGESGFGSRRAERSVLDD
EDELIADEVADDDDYEEEEEDDDDFDDE
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atgactaacgaaaaaatgatttttcgcaatcgggtggttgataaaggtcaactgagaaat
ttaatttcttgggcctttacgcattatggtacggcgcgaaccgcagtgatggcggacaaa
ctgaaagatttgggatttcgctacgctaccaaagcaggggtttccatcagtgtagatgac
ttgatgataccaccaactaagcgattgctcttagacgcagccgaggaagaaattcgcgct
actgaaacccgttatcaacggggagaaattactgaagtagaacgcttccaaaaggtaatc
gatacttggaatggtactagtgaagcattgaaagatgaagtagtcgttcacttcaagaag
actaatcccctcaactccgtatacatgatggcattctccggggcacggggtaacatctct
caagttcggcagttggtggggatgcggggactgatggcagatcctcaaggggaaattatc
gatttacccatcaaaaccaacttccgtgaaggactgactgtgacggaatacattatttcg
tcttacggtgccagaaaaggattggtggatactgccttgcggacggctgactctggttat
ctcacccgtcgtttggtagacgtatcccaggatgtgattattcgggaatttgactgtggt
accaccagaggaattcccattcgaccaatgacagaaggtgctaaaaccttgatccctttg
ggaacccgcttgatgggacgggtaattggcgaagatgtgctgcatccagtgacaaaagaa
gtaattgcaccacgcaataccccagttactgaggacttggctaagaaaatcgaaaaatct
ggggtggcagaagttatgctgcgatcgcccctaacttgtgaagctgcacgttctgtctgt
caacactgctacggctggagtttagcccacgccaagatggtggatttgggcgaagctgtg
gggattattgccgctcaaagtatcggtgaacctggtacccagctaaccatgcggacattc
cacactggtggggtatttactggagaagtggcgcaacaagttcgttccaaaatcgatgga
actgtcaagcttccccgcaaactgaagaccagaacatatcgtacccgccacggggaagat
gccctctatgttgaagctaatggcatcatgcttttggagccaacaaaagtaggtgatgtt
accccagagaaccaagaggttcatcttacccaaggttcaacactatatgtatttgatgga
aataaggtaaaacaaggtcagttgttggcagaggttgcccttggtggacgcacaactcgg
actaatacagaaaaagcagttaaagatgtagcctctgacttagcaggggaagtgcaattt
gccgaagttgttccagaacaaaaaactgaccgtcaaggtaataccacaaccacagccgca
cgcggtggcttgatttggattttgtctggggaagtttacaacttgccccctggtgcagaa
ttggtggtgaaaaatggtgatgcgatcgcttctaacggagttttagcagaaaccaagtta
gccagtttgcacggcggtgtggtgcgcttgccggaagctaccccaggtaagagtaccagg
gaaattgaaattatcactgcttctgtggtactagaccaggcaacggtgacagtccaaagt
tcccaaggtcgcaataactacttagtctccactggcaacaaccaggtatttaacctccgg
gctacaccaggcacaaaagtgcaaaatggtcaagtagtagctgagttaattgatgatcgc
tatcggacaaccactggtggtttcctgaaattcgcgggtgtagaagtccagaaaaaaggc
aaagccaagctaggttatgaagtcgtgcagggcggtactcttttgtggattcctgaagaa
agccacgaagttaataaagatatctccttgctgttggtagaagacggtcagtttgtagaa
gctggcactgaggtagtaaaagatatcttctgccaaaacagtggtgtaatagaagttacc
cagaaaaacgacatcctccgggaagttgtggttaagcctggcgaactgctgatggtggac
gatccagaatcagttatcgggcgagataacaccttcatccaaccaggtgaggaattccaa
ggcaatgtcgccacggaattgcgttatatccagtatgtggagacaccagaagggcctgcc
ctgttgagccgtccagtagttgagtttgccgtacctgataatccagatgtgccatcaact
acatcggttagtcaacaaaccgggcgatcgattcagttgcgggctgtgcagcgcctacct
tacaaagattcagaacgcgtcaaatctgttgaaggcgtggaactgctgcgaacccagcta
gtgctggaaattgagcaagaaggggaacaagaccataatgcttcaccccttgcagcagat
attgaattagtagaggatactgaagacccagaagttcaacgtttacaactggtaattttg
gaatccttggtaattcgtcgagacattaccgccgatgccacccaaggaagtacccaaacc
acgcttgaggtacacgatgggcttaccatcgctcctggagctgtggttgcacgtacccaa
atcttgtgtaaagaaggcggggaagtgcggggcgtccgcaaaggaaccgaaaacgtgcgt
cgctgcttagtgttgcgtgacgctgacaggctgaccattaatactagtactcagccaaag
gtaaaagtgggtgacttgctagtagaaggtacagaagttgctcctggagtttttgcccca
gaatcaggacaagtagtggatatcaaaagtgccactgctgcatctggtgaagaatcagcc
ctgagtactaaaaactacgttgttactacccgtatcggtcgcccttatcgagtcagccct
ggtgctgtgttgcagatagaagacggcgatttggtacaacggggtgataacttggtgttg
ttggtgtttgaacgcgccaaaaccggagatattattcaaggtttgccccggattgaggaa
ctacttgaagctcgtaaaccgaaagaagcgtgcattttatgtcgccgggggggtgaagtt
aaggtagtttacgctgaaagtggtgatgaagcgatcgctatcaaggtcgtagaatcaaat
ggcgtggtaacagattatcctctaggcccaggacaaaatttgattgtgccagatggatcg
tttgtgttagcgggacaaccattaaccgatggcccatccaatccccacgaaattttggaa
atcttctttagcctgggttccgaagatggaatctatgcttgtgctagccatgctttgcag
aaagtacagtcattcttggtgaatgaagtgcaaatggtgtatcaatctcaagggattgat
atttccgataaacacattgaagtgattgttcgccagatgaccaataaagtcaggattgat
gatggtggtgacaccacaatgcttcctggtgaattggtggaactgcgccaagttgagcag
gtgaacgaagctatggcaattacaggcggtgctagggcacagtataccccagtattgtta
gggatcaccaaagcatcgttgaacaccgacagctttatttccgccgcatccttccaagag
acaacacgggtacttaccgaagcagctatagaaggcaaatccgactggctgcgcggcttg
aaggaaaacgtgattatcgggcgattgattccggctggtactggctacaatacctatgat
gaacctggtgcgatcgatgattatgctgctgaaattaccagtagtgtcttggatgaagtc
gatgatcccctagatatggtcttagatgaccgcacagctcgcacctataatttagattct
cctactcttggggaatctggttttggtagcagacgtgcagaaaggtcagttctagatgat
gaagatgaattaatcgccgatgaagtagcagacgacgacgattatgaggaagaagaggaa
gacgacgatgatttcgacgatgaatag
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