Nostoc flagelliforme: COO91_06429
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Entry
COO91_06429 CDS
T05266
Name
(GenBank) deaD, ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nfl
Nostoc flagelliforme
Pathway
nfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COO91_06429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfl03019
]
COO91_06429
03009 Ribosome biogenesis [BR:
nfl03009
]
COO91_06429
Enzymes [BR:
nfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COO91_06429
Messenger RNA biogenesis [BR:
nfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
COO91_06429
Ribosome biogenesis [BR:
nfl03009
]
Prokaryotic type
rRNA helicases
COO91_06429
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
AUB40414
UniProt:
A0A2K8SY99
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All DBs
Position
complement(5998509..6000038)
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AA seq
509 aa
AA seq
DB search
MTLSFQELGISQERVEQLEKIGFTEPTNIQVQAIPQLLAGRDVVGQSQTGTGKTAAFSLP
ILERLDINQKAVQAIVLTPTRELAMQVHDAIAQFIGNEGLRVLAIYGGQSIDRQMLQLKR
GVHMVVGTPGRVIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPVDRQTA
LFSATMPPSIRMLVNKFLRSPATVTVEQPKAAPNKINQVAYLIPRHWTKAKALQPILEME
DPETALIFVRTRRTAAELTSQLQGAGHSVDEYHGDLSQQARERLLSRFRNRQVRWVVATD
IAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQTFERH
NRQSWQLLTIPTRAQIEARHILKLQEQVREALTGERLASFLPIVSELIEEYDAQAIAAAA
LQIAYDQTRPAWLSSDVEIPQEESSAPKPRLGKRRESSSDRPRTAWKSDSSNGEERHSSP
KPKLRTSGQDSSASPSKKIGSPTARESAS
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgactctttcatttcaagaattaggcatttcccaagaacgtgtcgaacaactagaaaaa
atcggttttaccgaacccactaacattcaagtccaagcaattccccaattgctagctggt
cgtgatgtggtaggtcaatctcaaactggaacaggcaaaacggcagcattttcactgcca
attttagagcggctggatattaatcaaaaagccgtgcaagccatagtgttaacaccaact
cgtgaattagcaatgcaagttcacgatgcgatcgcgcaattcattggtaatgaaggattg
cgagtgttagcaatctacggtggtcaatcaattgaccgccaaatgttacaactcaaacgt
ggtgttcacatggttgtgggcactccaggacgggtgatcgatttgctcgatcgcggctgt
ttaaagctggatcaagtaaagtggtttgtgttggatgaagccgatgaaatgttgagcatg
ggctttatcgacgatgtgattaaaattctctctcaagcgcctgtagatcgccaaacagct
ttattctcggcaacaatgccaccatcaattcggatgttggtgaacaagttcttgcgatcg
cctgcaactgtcaccgttgaacagccaaaagctgctcccaacaaaatcaatcaagtagct
tacttgatcccccgccactggacaaaagctaaagctttacagccaattctggaaatggaa
gatccagaaacagctttaatctttgtccgcactagacgcacagccgcagaactcaccagt
cagttacaaggggctggccacagtgtcgatgaataccacggtgacttgtcgcaacaagcc
cgggaacggttattgagccgattccgtaaccgtcaagttcgctgggtggtagcaactgat
attgccgcacgagggctagatgtcgatcaactctcccatgtgatcaactacgacttaccc
gatagcgtagaaacctacgtccatcgcattggtcgtactggtcgtgctggtaaagaagga
acagcaatttccttagtacaaccatttgagcggcgcaagcagcaaacatttgaacgtcat
aaccgccaaagttggcaattgctgaccattcccacacgcgcccagattgaagcgcgacac
attctgaaattgcaagaacaggtgcgagaagctttgacaggtgagcgtttggcttcattc
ttgccaattgtcagtgaactaattgaagaatacgatgctcaagcgatcgccgcagctgca
ctgcaaatcgcttatgatcaaactcgtcccgcttggttgagttcagatgtagaaattccc
caagaggaatcctctgctcccaaaccaagactcggtaagcgtcgtgaatcttccagcgat
cgtccccgtactgcgtggaaatcagatagcagcaatggagaagaaagacattcttctccc
aagcccaaactgcggacaagtggacaggattcttctgcatctcctagtaaaaagataggt
tcacctacagctagggaatcagcttcttag
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