Nostoc flagelliforme: COO91_07410
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Entry
COO91_07410 CDS
T05266
Name
(GenBank) rnr, ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
nfl
Nostoc flagelliforme
Pathway
nfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COO91_07410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfl03019
]
COO91_07410
03016 Transfer RNA biogenesis [BR:
nfl03016
]
COO91_07410
Enzymes [BR:
nfl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
COO91_07410
Messenger RNA biogenesis [BR:
nfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
COO91_07410
Transfer RNA biogenesis [BR:
nfl03016
]
Prokaryotic type
tRNA degradation factors
COO91_07410
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
AUB41362
UniProt:
A0A2K8T0Z4
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All DBs
Position
complement(6893361..6895715)
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AA seq
784 aa
AA seq
DB search
MEFSIATLLANFTDDKLVARKVLEKKLGCEDEKSLQKLHIALDVLEKIGILVKERGKYRR
VSEEGIIEAKLRCSSKGFCFAIQDVEGAEDIYIRESHLSNAWNGDRVLVRVLKEGSRRRS
PEGEVKLILERSNHTLLARIKQVEAGFRAVPLDDRLLFELKIQPNGAKLEEAIDHLVHVE
VLRYPLAQYPPLGRVVQILGSDAEAAADIDLVTCKHDLSRTFPDNVLDAAAKLPKKLLKA
DLKNRLDLRNLFTFTIKGVNGDTKVIENAFSLEKNLAGNWLLGVHITDVSHYVQPDEALD
REALKRGKSVYLGELVLPILPPGVVERCSLVPGSDRLTISFLITIDPQSGQVLEWEIQPS
VINVETALTTEQAQAILTGESQVQSPQVSQILQDLQALQTAVKQVRLTRGSLQLNLPPSQ
NAYYDEGILGAVVVNDLPVRSLLTELVLLVNQLVATHLNALGVPAIWRVQGTPDVEDVQE
MLKLAVNLGVDLTLDPEVDIQPLDYQHLTTAFAESPSEQVLTYLLQDTLKPSAYSTTKGS
HFGLALPQYVHFSAPLRRYPDLLMQRVYYSLLENGRDRRNTRVRERVNLRHSSSHEEINW
NVLPPELQQELQSDLTRVIVQINDREKEVQEAEADLAGLQKAQLMKQRIGQVFQGVITGV
QSYGFFVEIEVPAAEVESSSNPGVPLRVEGLVHVSSLKDDWYEYRARQQALFGRKNRASY
RLGDRVAVQVKSVDYYRQQIDLVTVGSDGVPRGLTGGGSNEELSDLYLPNDIEPDDLDPY
SDDE
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcaatcgctacactccttgccaatttcaccgatgataaattggtagctcgg
aaggttttagaaaagaaacttggctgtgaagatgaaaaaagtttacaaaaacttcacatt
gccttagatgttctcgaaaaaatcggtattttagtgaaagaacggggcaagtaccgccgt
gtctcagaagagggaataatcgaagcaaaactccgttgttctagtaaaggtttttgcttt
gctattcaagatgtggaaggagctgaggatatttacatccgcgaaagtcatctgagtaat
gcttggaatggcgatcgcgttttggtcagagttctcaaagaaggcagtcgccgtcgctct
cctgaaggcgaggtgaagctaattctagaacgttctaaccacactttactggcacgaatt
aagcaggtggaagctggttttagggctgtgcctttggatgatcgattgctgtttgaactt
aagatccagcctaacggggcaaagttggaagaagcgatcgatcacttggttcatgtagaa
gttttgcgttacccattggcacaatatcctccccttggtcgagtggtgcaaatcctcggt
agcgatgccgaagctgctgctgatatagatttagttacgtgcaaacacgacctttcccgg
acttttccagataatgtcctagatgcagccgccaagttgcccaaaaagctactcaaagca
gacctgaaaaatcgactggatttgcgtaatttatttaccttcaccattaaaggggtaaat
ggcgataccaaagttatagaaaacgcttttagtttagaaaaaaacttagccggaaattgg
cttttgggcgttcatatcaccgatgtttctcactatgtccaacctgacgaagccctagat
agagaagcacttaaacggggcaaatcagtgtatctgggagaattagtgctgccaattttg
ccccctggtgtggtagaacgctgttctttagtacctgggagcgatcgcttaactatctct
tttttaattaccattgatccccaatctggacaagtcctagagtgggaaattcaacccagt
gtaattaacgtcgaaactgcactgactactgaacaagcccaagcaattctcacgggtgaa
tctcaagttcaatctccacaggtttcccaaatcttgcaagacctccaagccttgcaaaca
gccgtcaaacaggtaaggttgactcgtggtagcctccagttgaatctgccgcctagccaa
aacgcctactatgatgaggggattctcggcgctgtggtggtgaatgatttaccagtgcga
tcgctactcacggagttggtactgttagttaatcaactggtagcaactcacttaaatgct
cttggtgttcccgccatctggcgagttcaaggtacacccgatgttgaagatgtccaggaa
atgctgaaattggcagtaaatttgggcgttgacctcacactagatccagaagtcgatatc
caacccttagattaccaacatttgactacagcttttgcggaatctccctctgagcaagtt
cttacttacttattgcaagatacacttaagccgtcagcgtacagcaccaccaaaggatct
cactttggtctggcactaccgcaatatgtccactttagcgctcccttgcggcgttaccca
gatttgctcatgcagagagtgtattactcgctactcgaaaacggacgcgatcgccgcaat
acccgtgtgagagagcgcgttaacctgcgccactcctccagccacgaggaaattaactgg
aacgttttacccccagaattgcaacaagaactgcaaagcgatttaactagggtaattgtc
caaatcaacgaccgagaaaaagaagtccaagaagctgaagccgatttagccggactgcaa
aaagcccaactgatgaagcaacgcatcggtcaggtatttcaaggcgtgattaccggggtt
caatcctacggtttctttgtggaaattgaagtaccagcagccgaggtagagtccagcagt
aatcctggtgtgcctttgcgggtagaaggattggtacacgtcagttctctcaaggatgat
tggtatgaatatcgcgccagacaacaggcactgtttggtcggaaaaatcgcgcttcttac
agattaggcgatcgcgtcgccgtacaagttaagagtgtcgattactaccgtcagcaaatt
gatttggtaacagttggcagcgatggcgtacccagaggtttaactggcggtggttccaat
gaggagctttcagacctctacttaccaaatgacattgagcctgatgacctagacccttac
tctgatgatgagtaa
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