Candidatus Nitrosocosmicus franklandianus: NFRAN_1747
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Entry
NFRAN_1747 CDS
T05935
Symbol
rrp
Name
(GenBank) Exosome complex component Rrp4
KO
K03679
exosome complex component RRP4
Organism
nfn
Candidatus Nitrosocosmicus franklandianus
Pathway
nfn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NFRAN_1747 (rrp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfn03019
]
NFRAN_1747 (rrp)
Messenger RNA biogenesis [BR:
nfn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NFRAN_1747 (rrp)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
NFRAN_1747 (rrp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
RRP40_S1
RRP4_S1
KH_6
ECR1_N_2
KH_2
KH_KRR1_2nd
Motif
Other DBs
NCBI-ProteinID:
VFJ14069
UniProt:
A0A484ICY0
LinkDB
All DBs
Position
NFRAN:1533019..1534095
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AA seq
358 aa
AA seq
DB search
MQEIKRRYVIPGDKIIEGNYKPLMNVIKSGNYLVSTRVGIAEAGKDGVKVIPLSGVYIPR
VNDLVIGKVIDRSSLSWDIDINSCFFAHLPAQDVFGRDFSPARDDMGRQLSIGDLIIARI
VSFDRTRDPMLTVQDKDLGKIPYGEFIKISPTRVPRLIGKRGSMIQTIEQATQTRVIIGQ
NGIVVVTGRDHEGLSLAAKAIRLVEEESHTTNLTQRVKALLNVQDPTDPEQPESIDTSME
REPQPTQQQEQQQEQQQEQQQEQQQEQQQEQQQEQQQEQQQEQQQEQQQEQQQEQQQEQQ
QEQQQEQQQEQQQEQQQEQQQEQQQEQQSNTELHSSQQRQERSQQNPVKSSSKEKQKN
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaataaagagaaggtatgttatacctggagataagattatcgagggtaattat
aaacctttgatgaatgtcattaaaagtggtaattatttagtatcaacaagagttggaatt
gctgaagctggcaaagatggtgtaaaagttattcctttatcaggcgtatacattccaaga
gtaaatgatcttgtgataggtaaggtaatagatagatcttctctgtcgtgggatattgat
attaattcatgcttttttgcacatttacctgctcaggacgtattcggtcgagatttttca
ccagctagagatgatatgggacgacaactaagcattggtgacttaattattgcaaggatt
gtgtcattcgataggaccagagaccctatgcttactgttcaagataaagacttgggtaaa
attccatatggcgaattcataaaaatttctcctactcgtgttccgcgcttgatagggaaa
cgaggttccatgattcaaacaattgagcaagctacacaaactcgagttataataggccaa
aatggtatagtagttgtcacaggcagggatcatgaaggtttaagtttagccgcaaaggcc
ataagattagtagaagaagaatcacataccactaatcttactcaaagagtcaaagctttg
ctaaatgttcaagatccaacagatccagaacaacctgagtcaattgatacatctatggaa
agagaacctcaacctacacaacagcaagaacaacagcaagaacaacagcaagaacaacag
caagaacaacagcaagaacaacagcaagaacaacagcaagaacaacagcaagaacaacag
caagaacaacagcaagaacaacagcaagaacaacagcaagaacaacagcaagaacaacag
caagaacaacagcaagaacaacagcaagaacaacagcaagaacaacagcaagaacaacag
caagaacaacagcaagaacaacaatcaaacaccgagctgcattcatcacaacagcgacaa
gaacgatcacaacaaaatcctgtcaagtcgagctcaaaggaaaaacagaaaaattga
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