Candidatus Nitrosocosmicus franklandianus: NFRAN_1800
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Entry
NFRAN_1800 CDS
T05935
Symbol
rtcB
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nfn
Candidatus Nitrosocosmicus franklandianus
Brite
KEGG Orthology (KO) [BR:
nfn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nfn03016
]
NFRAN_1800 (rtcB)
Enzymes [BR:
nfn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NFRAN_1800 (rtcB)
Transfer RNA biogenesis [BR:
nfn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NFRAN_1800 (rtcB)
Prokaryotic type
tRNA splicing ligases
NFRAN_1800 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF3492
Motif
Other DBs
NCBI-ProteinID:
VFJ14122
UniProt:
A0A484IEQ2
LinkDB
All DBs
Position
NFRAN:1588106..1589584
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AA seq
492 aa
AA seq
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MSGSLVTKNGKNVVNKISDNQFQIEKDSSRGMNVPVTIFANDMLISKMALDRTLDQAVNV
TTLPGVRKHMVVLPDGHEGYGFPVGGVAASDFEEGIISPGGVGYDINCGVRLIRTNLLES
DIRSNLKHLVDSLFSSIPTGVGSEGAIKLTNAELDDLLIDGARWSVEHGYGIDSDLEACE
EGGKMNGADPSDISTNARKRGSMQLGSLGSGNHFLEIQKVDKILDKKAANIMGITQEGEI
QILIHCGSRGFGHQVCSDYLRLSEQAMKKYDLNVVDRELACVPNNSTEGESYRKSMFSAL
NFAWANRQMLTHWTRMTFQKVLNLTEQDLEMKLVYDVSHNIAKVERHKIDGEGSRDLVVH
RKGATRAFPSGMKQLPLKFQSIGQPVIIPGSMGTASWVLLGSTKSMDLSFGSTAHGAGRT
MSRSAAKRMHTLDGVKKKLESRGIYVRSLTKNGLIEESPDAYKDVDMVADVSHNVGIATK
VVRLVPLGVIKG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgtctggttcattagtaacaaaaaatggtaaaaatgtagttaataagatttcagataat
caatttcagatagaaaaggatagttcacgtggaatgaatgttccagtaacaatatttgca
aatgacatgctgatatccaaaatggcacttgatcgaacactagatcaggcagtaaatgtc
acaactcttcctggtgttagaaagcacatggttgtacttccggatggacatgaaggctac
ggatttcctgtaggtggggttgctgcatctgatttcgaagaaggcatcattagtcctggt
ggggttggatatgatattaattgcggagttagattgattcgaacgaatttgttagagtcc
gatatccgttcgaatcttaaacacctggtagattcgttattttcgtctatccctactggt
gtaggaagtgagggagctattaaactgactaatgcggagcttgatgatttgcttatagat
ggtgcgcgatggtcggtagaacacggttatggtatagatagtgatctggaagcatgtgaa
gagggcgggaaaatgaatggagcggatccttctgacatttctacaaatgcaaggaaaaga
gggtcaatgcaattggggagtttgggttcgggaaatcactttctggagatccaaaaggta
gacaagatacttgataagaaagcagcaaatataatgggtattacacaagagggagaaata
cagattctcatacattgtggttcgcgtggatttggacaccaagtttgttcagactatttg
agattatcagaacaagctatgaaaaagtatgatctaaatgtagtggacagagaattagca
tgcgtacccaataattcaacggagggtgaaagttacagaaaatcgatgttctctgcactg
aattttgcttgggcaaatagacaaatgcttacccactggactagaatgacatttcaaaag
gttctaaatttaactgagcaagatctagaaatgaaattagtttatgatgtgtctcataac
attgcaaaggtggaacgtcacaaaattgatggagaagggtctcgcgatttagtggtacat
agaaaaggagccacacgcgcatttccttctggaatgaaacaactaccattaaaatttcag
tcaatcggtcaaccagtaattattccaggctcaatgggtactgctagttgggttcttttg
ggctctacaaaatctatggatcttagcttcgggtcaactgcgcatggagcaggtagaacc
atgtcgagatcagctgcgaaaaggatgcatactcttgatggtgtgaagaaaaaactggag
tcaagaggaatatacgtcagatctttgaccaaaaatggactaattgaagaatctcctgat
gcatataaagacgtagatatggtagccgatgtgtcacataacgtgggaatcgctacaaaa
gtagtaagactcgttcctctgggagttattaaaggttaa
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