Candidatus Nitrosocosmicus franklandianus: NFRAN_1878
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Entry
NFRAN_1878 CDS
T05935
Symbol
csl
Name
(GenBank) Exosome complex component Csl4
KO
K07573
exosome complex component CSL4
Organism
nfn
Candidatus Nitrosocosmicus franklandianus
Pathway
nfn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NFRAN_1878 (csl)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfn03019
]
NFRAN_1878 (csl)
Messenger RNA biogenesis [BR:
nfn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NFRAN_1878 (csl)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
NFRAN_1878 (csl)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
Motif
Other DBs
NCBI-ProteinID:
VFJ14200
UniProt:
A0A484I907
LinkDB
All DBs
Position
NFRAN:1658615..1659241
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AA seq
208 aa
AA seq
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MKKVHEINRVTPGVLLSVIEEFDAGKNTYVDEGDVRSSVIGGSAIDFSDRILNVEQKNPP
MIPKIGDVVVGYIDMLFGNMISVRILYINEKFSKSGFSAIASTRISNASSNYNSNWRDRS
YKGKYIFKVGDIIRGKVYSLLNSSIHLTLDEKDLGVVYTICFSCGHEFTKVPGGLKCNFC
GNFEERKVSTDFGKESFTALYDKQFLKL
NT seq
627 nt
NT seq
+upstream
nt +downstream
nt
ttgaagaaggttcatgagattaatcgtgttactcccggagtattgctatctgtaatcgag
gaattcgatgcaggcaaaaatacctacgtagatgaaggtgatgtcaggtcttctgtaatt
ggaggttcagcaatagacttttctgaccgcatattaaatgtagagcaaaagaatccacca
atgattcctaaaattggtgatgttgtagtaggatacatcgatatgttatttggaaatatg
atatctgtaagaatactttatataaatgaaaaattttccaaatctgggttttcggccata
gcatccacacgtatatcaaatgctagtagcaactacaattcgaattggcgagatagaagc
tataagggtaaatatattttcaaagtaggtgatataatcagagggaaagtttatagcttg
ttaaattcttcgattcatttaactttggatgaaaaagatttgggagtagtttataccata
tgtttttcttgtggtcatgaatttactaaagttcctggtggattaaaatgcaatttctgt
ggtaattttgaagaaagaaaagtttcaaccgattttggtaaggaatcttttacagctttg
tatgataaacagtttcttaaactatga
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