Candidatus Nitrosocosmicus franklandianus: NFRAN_2736
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Entry
NFRAN_2736 CDS
T05935
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit A''
KO
K03041
DNA-directed RNA polymerase subunit A' [EC:
2.7.7.6
]
Organism
nfn
Candidatus Nitrosocosmicus franklandianus
Pathway
nfn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nfn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NFRAN_2736 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nfn03021
]
NFRAN_2736 (rpoC)
Enzymes [BR:
nfn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NFRAN_2736 (rpoC)
Transcription machinery [BR:
nfn03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
NFRAN_2736 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
VFJ15059
UniProt:
A0A484IJK1
LinkDB
All DBs
Position
NFRAN:2423188..2426982
Genome browser
AA seq
1264 aa
AA seq
DB search
MNDESIKILDGIRFSIWSPVEVRKFSVTEVTAPETYDEDGMPVQGGLMDNRLGTLEPGQK
CATCGNTSARCPGHFGHIELAEPVLHIAFIDDIHKLLLITCRSCNRIKLNNDELEKYKNL
RDSKAAYAVITLENVKDEIIEKAKKVKVCPHCQKEQYDLIFTKPTIFVEKTDIGENRLLP
ITIRERLLNVSNEDLILLGYDPKTARPEWFILQVLPVPPVTVRPSIILETGIRSEDDLTH
KLVDIIRVNQRLKESKEAGTPPLIVQDLVDLLQYHVTTYFDNEVSGIPQAHHRSGRPLKT
ITQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLTISDVGVPSDVAKKLTIPETVSSWN
IDKLKNLVLNGPNKYPGANYIIRPDGVKIRLDYVTDRAAIADSLMNGYTVERHLMDGDVV
IFNRQPSLHRMSIMAHNVKVLPYRTFRLHPAVCPPYNADFDGDEMNLHVPQSQEARAEAA
LLMKVQDQLISPRYGGPIIGAIRDFITGAFLLTKEDTLLTADEISNFAYLGGYDGPLPKP
EVEKDGKMFYTGRQLFSLFLPKDFNFVITSKWNKASKLQGKDVVIRNGQLISGVIDKASI
GAEEPDSVLHRIAKDYGNDEAKRFLDAILVMLKTYITHKGFSYGYSDLWLSEDTRKEISD
VIEKTYNKIDELIKQYHEGTLPLTRGLSPEEALELYVVNELSRARDRAGKIADRSFPDDN
SGVIMASTGARGSTLNIGQMTAALGQQSIRGKRIIKGYRNRALPHFRPGDQNPDSKGFVK
SNYRDGLNPIEFFFHAMGGREGLVDTAVRTQQSGYMQRRLINALEHLKIEYDLTVRDPHG
NIVQYIYGDDGIDPAKSDHGDAVNITRIVESESVVDNGPKTTEEEMKELLSKFKEKMNPK
LSQEIESALISYPLSKSSIKKVVQKIMDLFERAMVEPGEAAGVVTAQSIGEPGTQMTLRT
FHFAGVKERNVTLGLPRLIELVDARKKPVTPTMDIYLDEEHRLSREKALEVAKRIIFTRI
SDLVSKVDTDYSGNLTFYFSDKKIADRGTSIQEIHEVLKSSKKRYEVTVNEEQLLIKISL
SQEPDAQTLLTLRNKLLNGRVKGVPDIERVTIVKQNDEWVIQTAGSNLAKVVLVEGVDVT
RVTTNNVFEIWQTLGIEAARTALVKEITNTLEEQGLEVDIRHIMLVADLMTSKGYLQQIG
RHGIAGTKTSVLARAAFEITVPTIARAALEGQVEPLKGVTENVIVGATVPVGTGMIDLYM
SVKE
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacgaatcgataaaaattctggatggaattaggtttagtatttggtctcctgtt
gaggtaagaaaatttagcgttactgaagtaacagctccagaaacgtatgatgaggatggt
atgccagttcaagggggattaatggataatagattggggacattagaacctggacagaaa
tgtgcaacttgtggcaatacctctgcaagatgtcctggtcactttggccacatagagctt
gctgagccggtgttacacatagcctttatagatgacattcacaaattattgctaataact
tgtaggtcatgcaatagaatcaagttaaataatgacgaacttgaaaaatacaaaaatctt
cgagatagtaaagccgcatacgctgttattactctggaaaatgttaaggatgaaataatt
gagaaggctaaaaaagtcaaggtatgtcctcactgtcagaaggaacagtatgacctgata
tttacaaaaccaacaatatttgttgaaaaaactgatatcggagaaaataggctattacct
attaccattagagagagattacttaacgtttctaatgaagatctaatcttgttgggatac
gacccaaagacggctagacccgaatggtttattcttcaagtactgccagttcctccagtc
actgttaggccatcaataatcttggaaactggtattagatccgaggatgacttgactcat
aagttggttgatattatcagagtcaaccaaagattaaaagaaagtaaagaagcaggtacc
cctccactgatcgtacaagacttggttgatttgttgcagtatcatgtgactacctacttt
gacaatgaggtatctggtattcctcaggcccaccatcgatcaggacgaccactaaagaca
ataacacagaggcttaaaggaaaggagggacgattcagaggctccttgtcagggaagaga
gtagacttttcaagcagaactgtcatatctccggatcctaatttgactatttcagatgta
ggtgtcccaagcgatgttgcaaaaaagcttacaataccagagactgtatcatcttggaac
atagataaactaaagaatttggttttgaatggaccaaacaaatatccaggagcaaattat
ataatcagacctgatggggtaaaaatccgactcgattacgtaactgatcgagcagctatc
gcagattctctaatgaatggatacacagttgagcgtcacttgatggatggtgatgttgtc
atcttcaaccgtcaaccttctttacatcgtatgtcaattatggctcataacgtaaaggtg
ttaccttataggacattcaggctacatcctgccgtgtgtccaccgtataatgcggacttt
gatggcgatgaaatgaatttgcatgttccccagagtcaggaggcaagagcagaagccgca
ctattaatgaaggttcaggaccaacttatttctccaaggtacggaggacctataattggt
gccataagagattttattacaggcgcttttctgttgaccaaagaagatactcttttgacg
gctgatgaaatttctaattttgcttatttaggagggtatgatggtccattgccgaaacca
gaagttgaaaaggacggtaagatgttttatacaggaagacaattgttttcattatttttg
ccaaaagattttaactttgtaattacttcaaagtggaataaagcatcaaaattacaaggt
aaggatgttgtaataaggaacggacaattaatttcaggagttattgataaggcttcaatt
ggtgctgaagaacctgatagtgtattacacagaattgccaaggactatgggaacgatgag
gcaaaacgtttcctcgatgccattcttgtgatgctcaagacctatatcactcacaaagga
tttagttatggctactcggatttgtggctaagtgaagatactcgcaaggaaatttccgat
gttattgaaaagacctataataagattgatgaattgataaaacaataccatgaaggaact
ctacctttaactaggggattgtcacccgaggaggccttggaattgtatgttgtaaacgag
ctatcaagggcaagggatagggccggtaagatcgctgacagatcgtttccagatgataac
tctggtgtgattatggcctctacgggagccaggggttccactttaaatattggacaaatg
acggccgcactaggtcaacagtcaatccgaggaaagcgtatcattaaggggtacagaaat
agagcattgcctcatttcagacccggtgatcaaaatcctgattcgaaagggtttgtaaag
tcaaattatagagatggtctaaatccaatagaatttttctttcatgctatgggagggcga
gaaggtttggttgatacagctgtaagaacacaacaatcagggtacatgcagcgtaggcta
attaatgctttagagcatctaaagattgagtatgacctgactgtgagggatccccatgga
aatatcgtccagtatatttatggtgatgatgggattgatccagccaaaagtgatcacgga
gatgctgtaaatatcactagaattgtagaaagtgaatctgttgtagataacggacctaaa
actacagaagaagagatgaaggagttactatcaaagttcaaagagaagatgaatcccaaa
ctaagtcaagagatagaatcagcacttatttcttatccattgagtaagtcaagtattaag
aaggtggttcaaaaaattatggatctatttgaaagagcgatggtcgaacccggtgaagcg
gctggagttgttactgctcaatcgatcggtgaacccggcactcaaatgactcttcgaact
tttcattttgcgggagtaaaggaacgaaatgttacccttggattacctcgtttaatcgaa
ttggtggatgcgcgaaaaaagcctgttactccaactatggatatttatttagatgaagaa
catcgcctatccagggaaaaggctttagaagtggcaaaacgtattatattcacaagaatt
tctgatttagtgagtaaagttgatactgactatagcggaaatttaaccttttacttttca
gacaaaaaaattgctgatagagggacatctattcaagagattcatgaagtcctgaagagt
tcgaaaaagcggtatgaggttacagttaatgaggagcagttactgattaagatatcgtta
tcacaggagccagatgctcaaacacttctcactctccgaaataaactcttaaacgggagg
gttaagggtgttccagatatagaaagagttacaatcgtaaagcaaaatgatgagtgggtt
attcagacagctggatccaatttggctaaggttgtcttggttgaaggagtcgatgttacc
agagtaacaactaataacgtatttgaaatttggcaaactcttggaattgaggccgccagg
acagccttggttaaagagataacaaatactttggaagagcaaggtctagaagtagatatt
cgccacatcatgcttgttgcagatttaatgacctctaagggatacttgcagcaaattgga
aggcatggtatagcaggaacaaagacttctgtgttagctagagctgccttcgagattact
gtccctactatagcaagggcggctttagaaggacaagtcgaaccactaaagggggttact
gaaaacgttattgtaggagcgacggtgcctgtggggacgggaatgattgatctatatatg
agtgtaaaggagtaa
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