Candidatus Nitrosocosmicus franklandianus: NFRAN_3143
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Entry
NFRAN_3143 CDS
T05935
Name
(GenBank) Transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
nfn
Candidatus Nitrosocosmicus franklandianus
Pathway
nfn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
nfn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NFRAN_3143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nfn03021
]
NFRAN_3143
Transcription machinery [BR:
nfn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
NFRAN_3143
Prokaryotic type
Archaeal type
TFB
NFRAN_3143
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
VFJ15461
UniProt:
A0A484IE83
LinkDB
All DBs
Position
NFRAN:2792418..2793482
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AA seq
354 aa
AA seq
DB search
MYNNLDLRNTCPECDSAIIQDIVKGEFICSICGYVLQDNLEDFGQDSFSNDSSNRTKNIR
ASGVNSISYHDFGLHTEIDNQFRDYTGKHFKENSKKSILSLRKWNSIIRISSSKERRLSN
VLSRINEITSLLSVPKVVCETAALLYRNYESKCDTKGKSTSCMAAASVYYACKVCRVLRS
LNEIVRCSNSIEHSNDNQKLASKYYRAMVMVCENEEHLSQHQPEQQNKITDYIVAPVQAR
SSIKTNHSISNLQSISINQYISKLANIAKFDIKIERLALDIAKKTENHMLSDGKSPNGIA
AAYIYLASVLLGINILQMDISRLAGVTEVTIRNRCKDILTCFKIVLKVKPSLKV
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgtacaataatttagacttaagaaatacttgccctgaatgtgattcagctataatacaa
gatattgtaaaaggagaattcatttgcagcatatgtggttatgttttgcaggataacctc
gaggattttggtcaggattctttctcaaacgattcttcaaataggactaaaaatattcgt
gcgagcggtgttaatagcatatcttatcatgattttggccttcatacagaaattgataat
caatttagagattatacagggaaacattttaaagaaaattcaaaaaaatctattctcagt
cttagaaaatggaacagtataattagaatttccagttcaaaggagagaaggctttcaaat
gtactaagtaggataaatgaaatcacttcgctactttccgtcccaaaggttgtgtgtgaa
acggcggcattattatatcgaaactatgaaagtaaatgcgataccaagggaaaatctact
tcctgtatggcagctgcttcagtttattatgcttgtaaagtttgcagggttctgaggtca
ttaaacgaaatagttcgttgcagtaattcgatcgaacattcaaatgataatcaaaaactt
gcctcaaaatattaccgagcaatggttatggtatgtgagaatgaggaacatttgagccaa
catcaaccagaacaacagaacaaaatcacagactatatagtcgcaccagtacaagctcgc
agttcaatcaaaaccaaccatagcatatcaaacctacaatcgattagtattaatcaatat
atttctaaactcgccaatattgcgaaatttgatataaaaatagagagattggcattagat
atagcaaagaaaactgaaaatcacatgctatcggatggaaaatcacctaatgggattgca
gccgcatatatatacttggcatccgtgttgcttggaattaacattctccagatggatata
tctagacttgcaggtgttactgaagtcaccatccgcaacagatgtaaggatatattaact
tgctttaaaatcgtccttaaagttaagccatccttaaaagtataa
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