Nocardia farcinica NCTC11134: ERS450000_00141
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Entry
ERS450000_00141 CDS
T04524
Symbol
hrdB_2
Name
(GenBank) RNA polymerase principal sigma factor hrdB
KO
K03086
RNA polymerase primary sigma factor
Organism
nfr
Nocardia farcinica NCTC11134
Brite
KEGG Orthology (KO) [BR:
nfr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ERS450000_00141 (hrdB_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nfr03021
]
ERS450000_00141 (hrdB_2)
Transcription machinery [BR:
nfr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ERS450000_00141 (hrdB_2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HC2
Extensin_1
HTH_20
Motif
Other DBs
NCBI-ProteinID:
CRY73453
UniProt:
A0A0H5NCX5
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All DBs
Position
1:complement(134058..135422)
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AA seq
454 aa
AA seq
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MVATTRQTAGSADADSEEPTAARPVRKAAAKKAPAKKAAAKKAPAKKAAAKKAPAKKATT
KKAGPDGEPGADEPIDEEAIDLEDLDDLEVDEGDLADDPEIAEAAEEPAEDEEAEEEPSA
ADKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIE
AGLYAAEKMREFAESGEKLPVAMRRDYNWIVRDGNRAKNHLLEANLRLVVSLAKRYTGRG
MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE
VINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQ
LGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLDEIGQ
VYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
gtggtagccacgacccgtcagaccgccggttcggccgacgccgactccgaagaacccacc
gcagcacggccggtccgcaaggctgccgccaagaaggccccggccaagaaggccgcagcg
aagaaggcacccgccaagaaggccgcggccaagaaggcgcctgcgaagaaggccaccacc
aagaaggccggccccgacggcgagcccggcgcggacgagcccatcgacgaggaggccatc
gacctcgaggatctcgacgatctcgaggtggacgagggcgacctcgccgacgacccggag
atcgccgaggccgccgaggagcccgccgaggacgaggaggccgaggaggagccctcggcc
gccgacaaggcctccggcgacttcgtctgggacgaggaggaatccgaggcgctgcggcag
gcccgcaaggacgccgaactcaccgcctcggccgactcggtgcgcgcctacctcaagcag
atcggcaaggtggcgctgctcaacgccgaagaggaggtcgagctcgccaagcggatcgag
gccggcctgtacgcggccgagaagatgcgcgagttcgccgagtccggcgagaagctgccg
gtggccatgcgccgcgattacaactggatcgtgcgcgacggcaaccgcgccaagaaccac
ctgctcgaggcgaacctgcgcttggtcgtctcgctggccaagcgctacaccggccgcggc
atggcgttcctggacctgatccaggagggcaacctcggcctgatccgcgcggtggagaag
ttcgactacaccaagggctacaagttctcgacctatgccacctggtggatccgccaggcc
atcacccgcgcgatggccgaccaggcccgcaccatccgcatcccggtgcacatggtcgag
gtcatcaacaagctcggccgcatccagcgcgagttgctccaggacctcggccgtgagccg
acgccggaggagctggccaaggaaatggacatcacgccggagaaggttctcgagatccag
cagtacgcgcgcgagccgatctcgctggaccagaccatcggcgacgagggcgacagccag
ctcggcgacttcatcgaggactccgaggccgtggtcgcggtcgacgcggtgagcttcacc
ctgttgcaggatcagctgcagtcggtgctggagacgctgtccgagcgcgaggcgggcgtg
gtgcggctgcgcttcggcctcaccgacggccagccgcgcaccctcgacgagatcggccag
gtctacggagtcacccgggagcgcatccggcagatcgagtcgaagacgatgagcaagctg
cgccaccccagccgctcccaggtgctgcgcgactacctggactga
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