Nocardia farcinica NCTC11134: ERS450000_01549
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Entry
ERS450000_01549 CDS
T04524
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
nfr
Nocardia farcinica NCTC11134
Pathway
nfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ERS450000_01549 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfr03400
]
ERS450000_01549 (recD)
Enzymes [BR:
nfr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ERS450000_01549 (recD)
DNA repair and recombination proteins [BR:
nfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ERS450000_01549 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
UvrD-helicase
RecD_N
AAA_22
NAT10_TcmA_helicase
SH3_13
T2SSE
AAA_16
Motif
Other DBs
NCBI-ProteinID:
CRY75848
UniProt:
A0A0H5NK03
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All DBs
Position
1:complement(1555794..1557680)
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AA seq
628 aa
AA seq
DB search
MTSIQLAQRGTGLLRTFNEAGVLSAADVHVAVRLGRLGREESELVLFAAALAVRAVRSGS
VCLELHRMREIGVDADESWDAGTGIDPATLPWPDVEAVIAALRVSPLVCGGPAGPLCPLR
VVPGDDGPLLYLDRYFRQEQTIRRVLTERAASHPRVDAAIVRRELDRLFGADHDGAPDRQ
RLAAALAATHWTTVVAGGPGTGKTHTIARILALLDAHRRADPKAPPLRIALAAPTGKAAA
RLQEAVREQAGELGLPELSAATLHRLLGWQRGRRTRFRHNEFNRLPYDVIVVDETSMVSL
TMMSSLLAALRPDTRLVLVGDPDQLASVDAGAVLADLVAGPVLGIPNPELDRILGGPPPD
LAAHPEGLTALERTRLRGGIVRLTRGRRFGGRIAELAVAVRAGDADRALDLLHTGGDDLS
LCAPDDVAAVRADVVRAARTVTAAAQAGDATGALTALESHRLLCAHRQGPFGVERWDRLA
GEWAAAAGAGPDSAQSSWYPGQPLLVTANDHEARIYNGDTGVIVAMPDGSLRAALQRGSE
PYLVHPTQFPAVVTVFAMTIHRSQGSQYDTVSIVLPEPESTLLTRELLYTAITRARGHVR
VIGTEESIRAAVGRRVLRASGLSRPAGG
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
gtgacctcgatccagctggcgcagcgcggcaccggactgctgcgcaccttcaacgaggcc
ggggtgctctcggccgccgacgtgcacgtggcggtgcggctcggcaggctcggccgcgag
gaatccgagctggtgctgttcgcggccgcgctggcggtgcgggcggtgcggtcggggtcg
gtgtgcctggagctgcaccggatgcgcgagatcggggtggacgccgacgagagctgggac
gcgggcaccggcatcgacccggccaccctgccctggccggacgtcgaggccgtgatcgcc
gcgctgcgggtgagcccgctggtgtgcggtggtccggccggcccgctgtgcccgctgcgg
gtcgtacccggcgacgacggcccgctgctgtacctggaccggtacttccggcaggagcag
accatccggcgcgtactcaccgaacgcgccgcgagccacccccgggtcgacgccgcgatc
gtccgccgcgaactcgaccggctgttcggcgccgaccacgacggcgcgcccgatcggcag
cggctggcggccgccctggccgccacgcactggacgacggtggtcgccggcggtccgggc
accggcaagacccacaccatcgcccgcatcctcgcgctgctcgacgcccaccgccgcgcc
gaccccaaggcgccgccgctgcgcatcgccctggccgcccccaccggcaaggccgccgcc
cggctgcaggaggcggtgcgcgaacaggcaggcgagctcggcctgcccgagctgtcggcc
gccaccctgcaccggttgctcggctggcaacgcggccgtcgaacccgcttccgccacaac
gaattcaaccgcctgccctacgacgtgatcgtggtcgacgagacctcgatggtgtcgctg
accatgatgagcagcctgctcgccgcgctacggccggacacccggctggtactcgtcggc
gacccggaccagctggcgtcggtcgacgcgggcgcggtgctcgccgacctcgtcgccggg
ccggtgctcggcatccccaacccggagctggaccgcatcctcggcggccccccaccagac
ctcgccgcgcatccggagggcctgaccgcgttggagcgcacgcggctgcgcggcggcatc
gtacggctcacccgcgggcgccgattcggtggccgcatcgccgaactcgccgtggcggtg
cgcgccggcgacgccgaccgcgcactcgacctgctgcacaccggcggcgacgacctgtcg
ttgtgcgcgcccgacgacgtcgccgccgtccgcgccgacgtggtgcgcgccgcccggacc
gtcacggccgccgcgcaggccggggacgcgaccggcgcgctgaccgccttggaatcgcat
cggctgttgtgcgcgcaccggcagggcccgttcggtgtggaacgctgggaccggctcgcg
ggggagtgggccgccgcggcgggcgcgggcccggactccgcgcagtcgtcctggtatccg
ggccagccgttgctcgtcaccgccaacgaccacgaggcccgcatctacaacggcgacacc
ggggtgatcgtcgccatgcccgacggttcgctgcgggcggccctgcaacgcggcagcgag
ccctacctggtccaccccacccagttcccggcggtggtgaccgtgttcgcgatgaccatc
caccgcagccagggcagccagtacgacaccgtctccatcgtgctgcccgaacccgaatcc
accctgctcacccgcgaactgctctacaccgcgatcacccgggcgcgcgggcacgtccgc
gtcatcgggaccgaggagtcgatccgggcggcggtggggcggcgcgtgttgcgggcgagc
gggctgtcgcggcccgcgggcggatga
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