Nocardia farcinica NCTC11134: ERS450000_02313
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Entry
ERS450000_02313 CDS
T04524
Symbol
dnaE_1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nfr
Nocardia farcinica NCTC11134
Pathway
nfr03030
DNA replication
nfr03430
Mismatch repair
nfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ERS450000_02313 (dnaE_1)
03430 Mismatch repair
ERS450000_02313 (dnaE_1)
03440 Homologous recombination
ERS450000_02313 (dnaE_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nfr03032
]
ERS450000_02313 (dnaE_1)
03400 DNA repair and recombination proteins [BR:
nfr03400
]
ERS450000_02313 (dnaE_1)
Enzymes [BR:
nfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ERS450000_02313 (dnaE_1)
DNA replication proteins [BR:
nfr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ERS450000_02313 (dnaE_1)
DNA repair and recombination proteins [BR:
nfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ERS450000_02313 (dnaE_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
DUF655
Motif
Other DBs
NCBI-ProteinID:
CRY77280
UniProt:
A0A0H5NMX9
LinkDB
All DBs
Position
1:complement(2323307..2326855)
Genome browser
AA seq
1182 aa
AA seq
DB search
MAASSGSFVHLHNHTEYSMLDGAAKISPLFTEAKRLGMTAVGMTDHGNMYGASEFYNSAK
KHGLKPIIGIEAYIAPGSRFDTKRVQWGDPSQKGDDVSGSGAYTHMTMVAENATGLRNLF
KLSSLASIEGQLGKWARMDAEIIAQHAEGIIATTGCPSGEVQTRLRLGHEREALEAAAKW
QEIFGPDNFFLEVMDHGLSIERRVREGLLDIGRKLGIPPLATNDCHYVYESDAANHEALL
CVQTGKTLSDPTRFKFDGSGYYLKSGDEMRAIWDAEVPGACDNTLLIGERVQSYDAVWEH
RDRMPIFPVPEGETQASWLHKEVMRGLERRFPNGVPEEYLRRAEYELGVICEMGFPAYFL
VVGDLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSMPDI
DIDFDDRRRGEMVRYATEKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADQIS
KALPPPIMAKDIPLSGIMDPEHERYKEAAEVRELIANNPDVAKIYETARGLEGLIRNAGV
HACAVIMSSEPLMDAIPLWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDALD
NIKANRGIDLDMDNLPLDDPATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFEDIVAV
LALYRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKDILADTYGLIVYQEQIMQIAQ
KVAGYSLGRADILRRAMGKKKAEVLEAEFEGFEAGMLENGFSKPAIKALWDTILPFAGYA
FNKSHAAGYGLVSFWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLSDCRRLGITVLPPD
VNESEQNFASVGKDIRFGLGAVRNVGANVVASIIQARKEKSKFTDFSDYLNKIDAIACTK
KVTESLIKAGAFDSLGHPRKGLMLIHSDAIDAVMATKKAEAIGQFDLFGGMDADESVTSV
FNVKVPDEEWETKHKLALEREMLGLYVSGHPLNGVEHVLAAQADTQIPAILEGDVKDGAQ
VTIGGILASVNRRINKNGLAWASAQLEDLTGGIEVLFFPQAYSVFGADVVEDAVVLVKAR
VSVRDDRISLIANDLAVPDLSAIGVAKPLAVTITSRMCTPDKIGELKRVLTRHPGTSDVH
VRYVGARDRTTMLKLSDSLRVSPSSALFGDLKALLGPSCLTS
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgtccggatcgttcgttcacctgcacaaccacaccgagtactcgatgctc
gacggcgcggcgaagatctctccgctgttcacggaggccaagcgactgggcatgaccgcg
gtcggcatgaccgaccacggcaacatgtacggcgcgagcgagttctacaactcggccaag
aagcacgggctcaagccgatcatcggcatcgaggcctacatcgcgcccggctcccggttc
gacaccaagcgcgtgcagtggggcgaccccagccagaagggcgacgacgtctccggctcc
ggcgcctacacccacatgacgatggtcgccgagaacgcgaccggcctgcgcaacctgttc
aagctgtccagcctggcctccatcgagggccagctcggcaagtgggcgcgcatggacgcc
gagatcatcgcccagcacgccgagggcatcatcgccaccaccggctgcccctcgggcgag
gtgcagacccggctgcgcctcggtcacgagcgcgaggcgctggaggcggcggccaagtgg
caggagatcttcggtcccgacaacttcttcctcgaggtgatggaccacgggctgtccatc
gagcgccgggtgcgcgagggcctgctcgacatcggccgcaagctcggcatcccgccgctg
gccaccaacgactgccattacgtctacgagtccgacgccgccaaccacgaggcgctgctg
tgtgtgcagaccggcaagacgctgtcggacccgacccgcttcaagttcgacggctccggc
tactacctcaagtccggcgacgagatgcgcgccatctgggacgcggaagtgcccggcgcg
tgcgacaacacgctgctgatcggtgagcgcgtccagtcctacgacgcggtgtgggagcac
cgggaccggatgccgatcttcccggtgcccgagggcgagacccaggccagctggctgcac
aaggaggtcatgcgcgggctggagcggcgcttcccgaacggggtgcccgaggagtacctg
cgccgcgccgagtacgagctcggcgtcatctgcgagatgggcttccccgcctacttcctc
gtcgtcggcgacctgatcaaccatgcccgcgaggtcggcatccgggtcggtcccggccgc
ggttcggcggccggttcgctggtcgcctacgcgatgggcatcaccaacatcgacccgatc
ccgcacgggctgctgttcgagcgcttcctcaaccccgagcgcgtctcgatgcccgacatc
gatatcgacttcgacgatcgccgccgcggtgagatggtccgctacgccaccgagaagtgg
ggcagcgaccgggtcgcccaggtgatcaccttcggcaccatcaagaccaaggccgccatc
aaggactcggcccgtgtgcagttcggccagccgggcttcgccatcgccgaccagatctcc
aaggcgctgccgccgccgatcatggccaaggacatcccgctctcgggcatcatggacccc
gagcacgagcggtacaaggaggccgccgaggtccgcgagctcatcgcgaacaaccccgac
gtcgccaagatctacgagaccgcgcgcggtctggagggcctgatccgcaacgcgggcgtg
cacgcctgcgcggtgatcatgtcctccgaaccgctgatggacgcgatcccgctgtggaag
cgcgcccaggacggcgccatcatcaccggctgggactacccgtcgtgtgaggccatcggc
ctgctcaagatggacttcctcggcctgcgcaacctcaccgtcatcggcgacgcgctcgac
aacatcaaggccaaccgcggcatcgacctcgacatggacaacctgccgctggacgatccc
gccacctacgaactgctctcgcgcggtgacaccctcggcgtgttccagctcgacggcagc
gccatgcgcgatctgctgcggcgcatgcagcccaccggcttcgaggacatcgtcgccgtg
ctcgccctctaccgccccggcccgatgggcatgaacgcccacaacgactacgccgaccgc
aagaacgggcgccaagaggtcaaaccgatccaccccgagctcgaggagccgctgaaggac
atcctggccgacacctacgggttgatcgtgtaccaggagcagatcatgcagatcgcgcag
aaggtggccgggtactcgctcggccgagcagacatcctgcgccgcgcgatgggcaagaag
aaggccgaggtgctcgaggccgagttcgagggcttcgaggcgggcatgctggagaacggc
ttctccaagcccgcgatcaaggcgttgtgggacaccatcctcccgttcgccggctacgcg
ttcaacaagtcgcacgcggcgggctacggcctggtctcgttctggaccgcctatctcaag
gccaactatccggccgagtacatggcgggcctgctcacctccgtcggcgacgacaaggac
aaggccgcggtctacctctcggactgccgcaggctcggcatcaccgtgctgccgccggac
gtcaacgaatccgagcagaacttcgcctcggtgggcaaggacatccgcttcggcctcggc
gcggtgcgcaacgtcggcgcgaacgtggtggcctcgatcatccaggcgcgcaaggagaag
tcgaagttcaccgacttctccgactacctgaacaagatcgacgccatcgcctgtaccaag
aaggtcaccgaatccctcatcaaggctggcgctttcgattcgctcgggcatccgcgcaag
ggcctgatgctgatccactccgacgccatcgacgcggtgatggcgacgaagaaggccgag
gccatcggccagttcgacctgttcggcggcatggacgccgacgagtcggtgaccagcgtg
ttcaacgtgaaggtgcccgacgaggaatgggagaccaagcacaagctcgccctggagcgg
gagatgctgggcctctacgtctccgggcatccgctcaacggcgtggagcacgtgctcgcc
gcccaggccgacacccagatccccgccatcctcgaaggcgacgtcaaggacggcgcgcag
gtgaccatcggcggcatcctcgcctcggtgaaccgccgcatcaacaagaacggcctggcc
tgggcctcggcgcagctggaggacctcaccggcggcatcgaggtgctgttcttcccgcag
gcgtactcggtcttcggcgccgacgtggtggaggacgcggtggtgctggtgaaggccagg
gtctcggtgcgtgacgaccggatctcgttgatcgccaacgatctcgccgtcccggacctg
tccgcgatcggcgtggccaaaccgctcgcggtcaccatcaccagccgcatgtgcacgccc
gacaagatcggcgagctcaagcgggtgctcacccgccaccccggcacctccgacgtgcac
gtccgctatgtcggcgcacgggacaggaccacgatgctcaaactctccgacagcctgcgg
gtgtcgccctcgtcggcgctgttcggtgatctcaaggcgctgctcggccccagctgcctg
accagctga
DBGET
integrated database retrieval system
