Nocardia farcinica NCTC11134: ERS450000_02392
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Entry
ERS450000_02392 CDS
T04524
Symbol
polC_1
Name
(GenBank) DNA polymerase III polC-type
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
nfr
Nocardia farcinica NCTC11134
Pathway
nfr03030
DNA replication
nfr03430
Mismatch repair
nfr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ERS450000_02392 (polC_1)
03430 Mismatch repair
ERS450000_02392 (polC_1)
03440 Homologous recombination
ERS450000_02392 (polC_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nfr03032
]
ERS450000_02392 (polC_1)
03400 DNA repair and recombination proteins [BR:
nfr03400
]
ERS450000_02392 (polC_1)
Enzymes [BR:
nfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ERS450000_02392 (polC_1)
DNA replication proteins [BR:
nfr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ERS450000_02392 (polC_1)
DNA repair and recombination proteins [BR:
nfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ERS450000_02392 (polC_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
UVR
GIY-YIG
RNase_H_2
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
CRY77421
UniProt:
A0A0H5P4H6
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All DBs
Position
1:complement(2414184..2415980)
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AA seq
598 aa
AA seq
DB search
MPAPEPSRAARQLAFDELDTPLYDTTFVVVDLETTGTSPEGDAITEIGAVKVRGGEVLGE
FATLVNPGRAIPPAVVQVTGITTALVYAAPRIEAVLPGFLEFAAGAVLVAHNARFDTAFL
RAAAARCALPWPDAPVLCTVKLARRVLGRDEAPSVRLASLARLLGASTQPTHRALDDARA
TVDVLHALIARVGNQGVHSLTELMDYLPDVSAGQRAKRSFAAGLPTAPGVYLFRGPSDEV
LYIGTAVNLRRRVRTYFTGSETRGRMKEMVALATRVDHVVCAHGLEAGVRELRLLVAHAP
PYNRRSKFPKRVWWITLTDEAFPRLAVVRTPTPDALGPFTSRQDTVDVAATLAEHAGLRT
CTTRLARSAVHDCPPAVVGGCPAARETPCSAAEYAPAPAAVRDLVAGRCDAVLHTMRARI
DSAAAAEHFEAAARLRDRMVAVVRALRRTQRLAALARIAELIAAHPDGAGGWEFAVVRYG
RLAGAGVAARGTPPMPVVEQIVAAAETVVPDGVAGVGVPDDEVAGLPEMVGPPLLGAPPE
EVGLIARWLERPGVRIVRTSHGYHEPRCGAGRWSGWVAAAEAAARARPDGADYAERLG
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgcccccgagccctcccgcgccgcgcggcagctcgccttcgacgagttggacact
ccgctctacgacaccaccttcgtcgtcgtcgacctggagaccaccggcaccagccccgag
ggcgacgccatcaccgagatcggcgcggtcaaggtgcgcgggggagaggtgctcggcgag
ttcgccaccctcgtcaatccgggccgggcgatcccgcccgcggtcgtgcaggtcaccggc
atcaccacggccctggtctacgcggctccccggatcgaggcggtgctgcccggattcctc
gagttcgccgcaggcgcggtgctggtcgcgcacaacgcccgcttcgacaccgcgttcctg
cgggccgccgccgcccgctgcgcactgccctggccggacgcgccggtgctgtgcacggtg
aagctggcgcgccgggtactgggccgcgacgaggcgccctcggtgcggctggcgtcgctg
gcccggctgctcggcgcgagcacgcaaccgacccaccgcgccctcgacgacgcccgcgcc
accgtcgacgtgttgcacgcgctcatcgcccgggtgggcaaccagggcgtgcacagtctc
accgagctgatggactacctgcccgacgtgagcgccgggcagcgcgccaaacgatccttc
gcggcagggctgccgaccgcccccggcgtctacctgttccgtggaccgtccgacgaagtc
ctctatatagggacggcggtgaacctgcgccgccgcgtgcgcacctacttcaccggctcc
gagacccgcgggcggatgaaggagatggtcgcgctcgccacccgggtcgaccacgtggtg
tgcgcgcacggcctggaggcgggcgtgcgcgagctgcgcctgctcgtcgcgcacgcgccg
ccctacaaccggcgctcgaaatttcccaagcgcgtctggtggatcaccctgaccgacgaa
gccttcccgcgcctcgcggtggtgcgcacgcccaccccggatgcgctgggtcccttcacc
tctcgccaggacaccgtcgacgtggccgcgacgctggccgagcacgccgggctgcgcacc
tgcaccaccaggctggcgcggtcggcggtgcacgactgtccgcccgcggtggtcggcggc
tgcccggcggcccgcgaaacaccgtgcagcgcggccgaatacgcgcccgcgcccgcggct
gtgcgggatctggtggcgggtcgttgcgacgccgtgctgcacaccatgcgcgcgcgcatc
gacagtgccgccgccgcggagcatttcgaggccgccgcccggctgcgcgaccgcatggtc
gcggtggtgcgggcgctgcgccgcacccagcggctggccgcgctggcccgcatcgccgaa
ctgatcgccgcccaccccgacggcgcgggcgggtgggagttcgccgtcgtccggtacggc
aggctggccggcgcgggggtggccgcgcgcggcaccccgccgatgccggtggtcgagcag
atcgtcgccgccgccgagacggtggtgcccgacggcgtggccggtgtcggcgtgccggat
gacgaggtggccggtctcccggagatggtgggcccgccgctgctcggcgcgccaccggag
gaggtcggcctcatcgcccggtggctggagcggcccggcgtgcgcatcgtgcgtaccagc
cacggctatcacgaaccgcgctgcggggcgggccgctggtccggctgggtcgccgccgcc
gaggcggcggcgcgcgcccgacccgacggggcggactacgccgaacgcttaggctga
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