Nocardia farcinica NCTC11134: ERS450000_02738
Help
Entry
ERS450000_02738 CDS
T04524
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nfr
Nocardia farcinica NCTC11134
Brite
KEGG Orthology (KO) [BR:
nfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nfr03016
]
ERS450000_02738 (rtcB)
Enzymes [BR:
nfr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ERS450000_02738 (rtcB)
Transfer RNA biogenesis [BR:
nfr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ERS450000_02738 (rtcB)
Prokaryotic type
tRNA splicing ligases
ERS450000_02738 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CRY78078
UniProt:
A0A0H5NRV3
LinkDB
All DBs
Position
1:2781669..2782886
Genome browser
AA seq
405 aa
AA seq
DB search
MFPVELSGARARTLMWAHEDEIEAAALQQLRNIARLDWVHGVRVMPDVHLGKGATVGSVI
AMRDAVAPAAVGVDIGCGMESVRTDLTAADLPDDLRSLRSRIEAAVPVGFAAHKDAVQVR
KLAARPSGVTTATLRTGWERFWAEFGALDERVAGREAKAHKQMGTLGGGNHFIEVCLDQD
DQVWILLHSGSRNIGKELAERHMEVARRLPHNQHLVDRDLAVFLAGTPEMAAYRHDLTWA
QEYAARNRAVMLALVCQAVREEFPAREVRFDEPISCHHNYVAEEIVDGMPMLVTRKGAVR
AGAGDLALIPGSMGTRSYVVRGKGNPASFQSASHGAGRRMSRNAAKRQFSVADLVAQTEG
VESRKDAGVLDEIPAAYKNIDEVIEAQRDLVDVVATLRQVLCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgtttcccgtcgagttgtccggtgcccgggcacggacgttgatgtgggcccacgaggac
gagatcgaggcggccgcgctgcagcaactgcgcaacatcgcccggctcgactgggtgcac
ggcgtccgtgtcatgccggacgtgcatctcggcaagggcgcgaccgtcggctcggtgatc
gccatgcgcgacgcggtggcaccggcggcggtcggcgtcgacatcggctgcggcatggag
agcgtgcgcaccgacctcaccgccgcggacctgcccgacgacctgcgctcgctgcggtcg
cggatcgaggcggccgtgccggtcggcttcgccgcgcacaaggacgcggtccaggtgcgc
aagctcgccgcgcgcccgtccggggtgaccacggcgaccctgcgcaccggctgggagcgg
ttctgggcggagttcggcgcgctcgacgagcgggtggccgggcgagaagccaaggcccac
aagcagatggggaccctgggcggcggcaaccacttcatcgaggtctgcctggaccaggac
gaccaggtgtggatcctgctgcactcgggcagccgcaacatcggcaaggaactggccgag
cggcacatggaggtggcgcggcggctgccgcacaaccagcacctggtcgaccgcgatctg
gcggtgttcctggcgggcaccccggagatggcggcctaccggcacgacctgacctgggcc
caggagtacgccgcccgcaaccgggcggtgatgctggcgctggtgtgccaggcggtacgg
gaggagttcccggccagggaggtccgcttcgacgagccgatctcgtgccatcacaactac
gtggccgaggagatcgtcgacgggatgccgatgctggtcacccgcaagggcgcggttcgc
gcgggcgcgggcgatctggcgctgatccccggctcgatgggcacgcgctcctacgtggtg
cgcggtaagggcaatccggcctccttccagtcggcctcgcacggtgcggggcggcggatg
agccgcaacgccgccaagcgccagttcagtgtcgccgatctggtggcccagaccgagggc
gtggaatcccgcaaggacgccggtgtcctcgacgagatcccggccgcgtacaagaacatc
gacgaggtgatcgaggcgcagcgcgatctggtcgatgtggtggcgaccctgcgtcaggtg
ctctgcgtcaaaggctga
DBGET
integrated database retrieval system
