KEGG   Nocardia farcinica NCTC11134: ERS450000_03141
Entry
ERS450000_03141   CDS       T04524                                 
Name
(GenBank) putative ATP-dependent helicase Lhr
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
nfr  Nocardia farcinica NCTC11134
Brite
KEGG Orthology (KO) [BR:nfr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nfr03400]
    ERS450000_03141
Enzymes [BR:nfr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     ERS450000_03141
    5.6.2.6  RNA 3'-5' helicase
     ERS450000_03141
DNA repair and recombination proteins [BR:nfr03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    ERS450000_03141
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr WHD_3rd_Lhr DEAD WHD_2nd_Lhr Helicase_C ResIII DUF6406 AAA_25 PhoH
Other DBs
NCBI-ProteinID: CRY78846
UniProt: A0A0H5P8E3
LinkDB
Position
1:complement(3240529..3244737)
AA seq 1402 aa
MVSFSTAVFSRATQEWFDGAFPAPTSAQLGAWQAIAAGEHTLVVAPTGSGKTLSAFLWAI
DELAATAPDPDAPPGTTVLYISPLKALAVDVERNLRAPLVGITQTAKRLGLDPPEITVGV
RSGDTPAAARRSMQRTPPDILITTPESLFLMLTSAARETLRTVRTVIVDEVHAIAGSKRG
AHLALSLARLDMLTERPVQRIGLSATVRPAEEVGRFLVGAAPITIVSPPAPKTFDLTVRV
PVPDMTEPGESDQPGSIWPHVDEAIVDLVLAHRSSIVFANSRRLAERLTARLNEAYAARV
GDPVSTSHAPPAQLGPSTEVIHGAEQLLARAHHGSVSKEQRALIEDDLKSGRLRCVVATS
SLELGIDMGAVDLVVQVEAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDVIHCAVAA
ERMVTGRIEALRIPAHPLDILAQQTVAVCALEPIDVDAWFDAVRATGSFATLPRSAYESV
LDLLSGRYPSDEFAELRPRLVWDRDAGTLTGRPGAQRLAVTSGGAIPDRGMFAVYMVGEK
NTRVGELDEEMVYESRVGDVFALGATSWRIEEITFDRVLVTPAFGQPGRLPFWHGDGLGR
PAELGAALGEFVRKAAKQTANRADAAADTDLGGLLAGAGLDANAAANLVALLDDQRAATG
HLPTDKTLVVERFRDELGDWRLVLHSPFGLPVHAPWALAVGARLRERFGVDAAPNASDDG
IVVRLPDTTDDPPGAELFVFEPDEIDDLVTEQVGGSALFASRFRECAARALLLPRRDPGK
RAPLWQQRQRSAQLLDVARKFPDFPILLETVRECLRDVYDLPALRDLLGRVARRQVRLVE
VETATPSPFANALLFDYIGQFMYEGDSPLAERRAAALSLDSGLLAELLGRVELRELLDTA
VLEQTERELQRLTPERRARDAEGLADLLRLLGPLTPEEAGQRCVRGRADEVADTGLPEAD
PSVAAATRSADDAPDGSMAGAEPEPSEFPADDGTGPHHRWFAELVAARRALEVSFAGRTW
WAAVEDASRLRDALGVPLPIGTPAAFIEPVADPLGDLVGRYARTHAPFGLDAVARRFGIG
PAVAATALHRLVTEKRVVEGEFTPGASGREWCDTQVLRRLRRRSLAAARHEVEPVATAAF
GRFLPAWQHVGTGELRGVDGVATVVEQLAGVPAPASAWESLILPARVRDYTPAMLDELTA
TGEVIWSGHGAITGKDGWIALHLAEQAPFTLPPPDDIELSETHLRLLAALGATPAPRAGA
DGPVPLPPVLHGGGAYFFRQLSDATGLLDDTAVAAALWELVWAGLVAGDTFAPVRALLSG
TTRTTTAHRTPRRAPVAAPTCHVPACRRAPARPPWPGAGRCCPSGPPTTPCARTPPPTCC
SSATACSPGARCRTRACRAASR
NT seq 4209 nt   +upstreamnt  +downstreamnt
atggtctcgttctccaccgcggtgttctcccgcgcgacccaggagtggttcgacggcgcc
ttccccgcgccgacctcggcccagctgggcgcgtggcaggccatcgcggccggggagcac
accctggtggtggcgccgaccggctcgggcaagaccctctcggcgttcctgtgggccatc
gacgaactcgccgccaccgcgccggacccggacgcgccacccggcaccaccgtgctctac
atctccccgctcaaggcgctggccgtggacgtcgagcgcaacctccgcgcgccgctggtc
ggcatcacccagaccgccaagcggctcgggctcgacccgcccgagatcaccgtcggcgtg
cgctccggcgacacccccgccgcggcccggcgcagtatgcaacgcaccccgcccgacatc
ctgatcaccacgccggagtcgctgttcctcatgctgacctcggcggcgcgggagacgctg
cgcacggtacgcacggtcatcgtcgacgaggtgcacgccatcgccggttccaagcggggc
gcgcaccttgctctgtcgctggcccggctggacatgctgaccgaacggccggtgcagcgg
atcgggctctcggcgacggtccgtccggccgaggaggtgggccggttcctggtgggcgcg
gcgccgatcacgatcgtctccccgcccgccccgaagaccttcgacctcaccgtgcgggtg
ccggtgccggacatgaccgagccgggcgagtccgaccagccgggctcgatctggccgcac
gtggacgaggccatcgtggatctggtgctggcgcaccgctcctcgatcgtgttcgccaat
tcgcgcaggctcgccgagcggctcaccgcccggctcaacgaggcctacgccgcgcgcgtc
ggtgacccggtgtccacctcgcacgctccgcccgcgcaactcggtccgtccaccgaggtg
atccacggcgccgagcagttgctcgcgcgcgcccatcacggctcggtgagcaaggagcag
cgcgccctcatcgaggacgatctcaagagcgggcggctgcgctgcgtggtggccaccagc
agcctggaactcggtatcgacatgggcgcggtcgacctcgtcgtgcaggtggaggcgccg
ccgtcggtggcgagtgggctgcagcggatcggccgggccgggcaccaggtcggcgagatc
tcgcgcggtgtgctgttcccgaagcaccgcaccgacgtcatccactgcgcggtcgccgcc
gaacgaatggtcaccggccgcatcgaggcactgcgcattcccgcgcacccgctcgacatc
ctggcccagcagaccgtggcggtctgcgcgctcgaaccgatcgacgtcgacgcctggttc
gacgcggtgcgcgccaccggcagcttcgccaccctgccgcggtcggcctacgagtcggtg
ctcgatctgctctccggccgctacccctccgacgaattcgccgagctgcggccccgcctg
gtgtgggaccgggacgcgggcacgctcaccggccggcccggcgcgcagcggctggcggtc
acgtccggcggcgccatccccgatcgcggcatgttcgcggtgtacatggtgggggagaag
aacacccgggtcggcgaactcgacgaggagatggtctacgagtcgcgggtgggcgatgtg
ttcgccctcggcgcgaccagctggcgcatcgaggagatcaccttcgaccgggtgctggtc
accccggcgttcgggcagccgggccggttgccgttctggcacggtgacgggctgggccgt
cccgccgaattgggtgccgcgctgggtgaattcgtgcgcaaggccgccaaacagaccgcg
aaccgggcggacgccgccgccgacaccgacctcggcgggttgctggccggggccggcctg
gacgccaacgccgccgcgaatctcgttgcgctgctggacgatcagcgcgcggccaccggg
cacctgcccaccgacaagacactggtggtggagcggttccgggacgaactcggggactgg
cggttggtgctgcactccccgttcgggctgccggtgcacgcgccgtgggcgctggcggtc
ggggcgcggctgcgcgagcgcttcggcgtcgacgccgcgccgaacgcctccgacgacggc
atcgtggtgcggctgcccgacaccaccgacgatccgccgggcgcggagttgttcgtcttc
gaacccgacgagatcgacgacctggtcaccgaacaggtcggcggttcggcgctgttcgcc
tcccggttccgggaatgcgcggcgcgggcgctgctgctgccgcgccgcgacccgggcaag
cgcgcgccgctgtggcagcagcggcagcgctcggcgcagctgctcgacgtggcccgcaag
ttccccgacttcccgatcctgctcgagaccgtccgcgaatgcctgcgcgacgtctacgac
ctgcccgccctgcgggatctgctcggccgggtcgcgcgcaggcaggtgcgcttggtggag
gtggagaccgccacgccctcgccgttcgcgaacgcgctgctgttcgactacatcggccag
ttcatgtacgagggcgacagtccgctggccgagcgccgcgccgccgccctgtccctggat
tccggcctgctcgccgaactgctcggccgggtggaactgcgcgaactgctcgacaccgcc
gtgctcgaacagaccgaacgcgaactccaacgtctcacccccgaacgccgcgcccgcgac
gccgagggcctggccgacctgctgcggctgctcggcccgctgacgccggaggaagcgggg
cagcggtgcgtgcgcgggcgagccgacgaggtcgccgacaccgggctaccggaggccgat
ccgtccgtcgccgcggcgacgcggtccgcggacgatgcgccggacgggtcgatggccggc
gccgaaccggagccgtcggagttcccggcggacgacgggaccggcccccatcaccgctgg
ttcgccgaactggtcgccgcccggcgcgccctcgaggtgagtttcgccggccggacctgg
tgggccgcggtcgaagacgcgtcccggctgcgcgacgcgctcggcgtgcccttgccgatc
ggcacccccgccgcgttcatcgagccggtggccgatccgctcggcgatctcgtcggccgc
tatgcccgcacgcacgccccgttcggcctcgacgcggtagcgcggcgcttcgggatcgga
ccggcggtggccgccaccgcgctgcaccgcctcgtgaccgagaaacgtgtcgtggagggc
gaattcacgccgggcgcgagcggccgggagtggtgtgacacccaggtgttacggcggctg
cggcgccgttcgctggcggcggcacggcacgaggtcgagccggtcgccaccgcggcgttc
ggccggttcctgcccgcgtggcagcacgtgggcaccggggagctgcgcggcgtcgacggc
gtcgccacggtggtggaacaactggccggggtgcccgcgcccgcctcggcgtgggaatcg
ctgatcctgcccgcccgggtgcgcgactacacccccgccatgctcgacgagttgacggcc
accggcgaggtgatctggtccgggcacggcgccatcaccggcaaggacggctggatcgcc
ctgcacctggccgagcaggcgccgttcacgctgcccccgcccgacgacatcgaactctcc
gagacccacctacggctgctggcggcgctcggcgcgacgcccgccccgcgcgccggcgcc
gacggcccggtgccgttgccgccggtcctgcacggcggcggcgcctacttcttccgtcag
ctcagcgatgccaccggcctgctcgacgacaccgccgtcgccgcggcgctgtgggagctg
gtgtgggccgggctggtcgccggggacaccttcgccccggtgcgcgcgctgctgtcgggc
accacccgcaccaccaccgcgcaccgcaccccgcgccgcgcccccgtggccgcgcctacc
tgccacgtcccagcctgccgacgcgcaccggcccgcccgccgtggccgggcgctggtcgc
tgctgcccgagcgggccaccgacaacaccgtgcgcgcgcacgccaccgccgacatgctgc
tcgagcgctacggcgtgctcaccaggggctcggtgcagaacgagggcgtgccgggcggct
tcgcgctga

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