Nocardia farcinica NCTC11134: ERS450000_03880
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Entry
ERS450000_03880 CDS
T04524
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
nfr
Nocardia farcinica NCTC11134
Brite
KEGG Orthology (KO) [BR:
nfr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nfr03032
]
ERS450000_03880 (topA)
03400 DNA repair and recombination proteins [BR:
nfr03400
]
ERS450000_03880 (topA)
Enzymes [BR:
nfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ERS450000_03880 (topA)
DNA replication proteins [BR:
nfr03032
]
Prokaryotic type
DNA Topoisomerases
ERS450000_03880 (topA)
DNA repair and recombination proteins [BR:
nfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ERS450000_03880 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
CRY80478
UniProt:
A0A0H5NYV9
LinkDB
All DBs
Position
p2:complement(376381..379326)
Genome browser
AA seq
981 aa
AA seq
DB search
MYSPVATRDRGAADQGRPLRRLVIVESPTKARKIAPYLGRNYTVEASVGHIRDLPRGAAD
VPAKYKGQPWARLGVDVDNDFEPIYVVSPDKKAKVTELKSLLADADELYLATDPDREGEA
IAWHLLETLKPKVPVRRMVFHEITEPAIRAAAADTRELDPDLVDAQETRRILDRLYGYEV
SPVLWKKVMPKLSAGRVQSVATRVIVQRERERMAFRSAEYWDIAAKLDAGTDEQSDAANP
RTFGARLVNVDGARVASGRDFGPDGQLKSASGVVVLDEARARRLAEALDGVDLAVTSAES
KPYSRKPYPPFMTSTLQQEAGRKLRFTSERTMRVAQRLYENGYITYMRTDSTTLSESAIA
AARSQATQLYGAEYVHPSPRQYNRKVKNAQEAHEAIRPAGDTFATPGQLHSRLDNDEFRL
YELIWQRTVASQMADARGTTLTLRITGVAGTGEECVFSASGRTITFPGFLKAYVESVDEE
AGGQSDDAESRLPALEEGQNVTAIELNPDGHSTNPPARYTEASLIKALEELGIGRPSTYS
SIIKTILDRGYVYKRGSALVPSWVAFAVVGLLEAYFGRLVDFDFTAAMEDDLDAIASGRE
RRGNWLSSFYFGGDSGVEGSVARSGGLKKMVGEQLDDIDAREVNSIKLFTDGEGRDVVVR
VGRYGPYLERLVTDPDDPDGDPISQRANLPDDLPPDELTPEVAEKLFATPQEGRSLGVDP
ATGHEIVAKEGRFGPYVTEILPEPATEEGAKKTAAKKTAPKPRTGSLFKSMDLASITLDD
ALKLLSLPRVVGTDPATGEEITAQNGRYGPYLKKGTDSRSLASEDQIFTITLDEALKIYA
EPKRRGGQSASAAPLRELGTDPVSGKPMVIKDGRFGPYVTDGETNASLRKGDEVESITDE
RAAELLADRRARGPVKKTAKKAAKKTAAKKTTATKAAATKTAATKTTATKTTAKKTTAKK
TTAAKKTAAKKAPAKSTAENS
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
gtgtattcgccggtggcaacacgagaccgcggtgcagccgaccagggccgtcccctgcgt
cgtctcgtgatcgtcgagtccccgaccaaggcccgcaagattgcgccctacctgggccgc
aactacacggtggaggcctcggtcggtcatatccgcgacctgccgcgcggcgccgccgat
gtgccggccaaatacaaaggacagccctgggctcgcctcggcgtcgacgtcgacaacgac
ttcgagcccatctacgtggtgagcccggacaagaaggccaaggtcaccgagctcaagagc
ctgcttgccgacgccgacgagctctacctcgccaccgaccccgaccgcgagggcgaggcc
atcgcctggcacctgctcgagaccctcaagcccaaggtgccggtgcgccggatggtcttc
cacgagatcaccgagcccgccatccgcgcggccgcggccgacaccagggaactcgacccg
gacctggtcgacgcgcaggagacccgccgcatcctcgaccgcctctacggctacgaggtc
agcccggtgctgtggaagaaggtcatgccgaagctctcggcgggccgggtgcagtcggtg
gcgacccgggtgatcgtgcagcgcgagcgcgagcgcatggcgttccgctccgcggagtac
tgggacatcgccgccaagctggacgcgggaaccgacgagcagagcgatgcggcgaacccg
cgcacgttcggcgcgcggctggtgaacgtcgacggcgcccgggtggccagcggtcgcgat
ttcggtcccgacggacaactgaagtcggcctccggtgtggtggtgctggacgaggcccgc
gcccgccggctcgccgaggcgctcgacggcgtcgacctcgcggtcacctcggccgagtcc
aagccgtactcgcgcaagccgtacccgccgttcatgacctcgaccctgcagcaggaggcg
ggccgcaagctgcgcttcacctccgaacgcaccatgcgcgtcgcgcagcggttgtacgag
aacggctacatcacctatatgcgcaccgactccaccacgctgtcggagtcggcgatcgcg
gcggcccgctcgcaggccacccagctctacggcgccgagtacgtgcatccgtcgccgcgc
cagtacaaccgcaaggtcaagaacgcgcaggaggcccacgaggcgatccgtccggcgggc
gacaccttcgccaccccgggccagctgcactcgcgcctggacaacgacgaattccggctc
tacgaactgatctggcagcgcaccgtcgcctcccagatggccgacgcgcgcggcaccacg
ctgaccctgcgcatcaccggtgtcgcgggtaccggtgaggagtgcgtgttctccgcgtcc
ggtcgcaccatcaccttccccggcttcctcaaggcctacgtcgagagcgtggacgaggag
gcgggcgggcagtccgacgacgccgaatcccggctgcccgcgctggaagagggccagaac
gtcaccgcgatcgagctgaaccccgacgggcacagcacgaatccgcccgcccgctacacc
gaggcctcgctcatcaaggcgctcgaggaactgggcatcggccgcccctcgacgtattcg
tccatcatcaagaccatcctggaccgcggctacgtctacaagcgcggcagcgcgctggtg
ccctcgtgggtggcgttcgcggtcgtcgggctgctcgaggcgtacttcggcaggctcgtc
gacttcgacttcaccgccgcgatggaagacgatctcgatgccatcgcctccggccgggaa
cggcgcggaaactggttgtccagcttctacttcggtggcgacagcggtgtggaggggtcg
gtcgcgcgctcgggcgggctgaagaagatggtcggcgaacagctcgacgacatcgacgcc
cgcgaggtgaactcgatcaagctgttcaccgacggcgagggtcgcgacgtggtggtccgg
gtcggccgctacggcccgtatctggagcgcctggtcaccgatcccgatgacccggacggt
gatccgatctcgcagcgggcgaacctgcccgatgatctgccgccggacgagctgaccccg
gaggtcgccgagaagctgttcgccaccccgcaggaggggcgcagcctcggcgtagatccg
gccaccgggcacgaaatcgtcgccaaggaagggcgtttcggcccgtacgtcaccgagatc
ctgccggagcccgccaccgaggagggtgccaagaagacggcggcgaagaagaccgcgccg
aaaccgcgcacgggctcgctgttcaagtcgatggatctcgcctcgatcaccctcgacgac
gcgctgaagctgctgtcgttgccccgggtggtcggcaccgatccggccaccggcgaggag
atcaccgcgcagaacggccggtacgggccgtacctgaagaagggcaccgattcccgttcg
ctggcgtcggaggaccagatcttcaccatcaccctcgacgaggcgctcaagatctatgcc
gagcccaagcgccgtggcggccaatcggccagcgccgcgccgctgcgggaactcggcacc
gatccggtgtccggcaagccgatggtgatcaaggacggccgcttcggcccgtacgtcacc
gacggcgagaccaacgccagcctgcgtaagggcgacgaggtcgagtcgatcaccgacgag
cgggcggccgaactgctcgccgaccgccgcgcgcggggaccggtcaagaagacggccaag
aaggcagcgaagaagaccgccgccaagaagaccaccgcgaccaaggcggccgcgaccaag
acggcggcgaccaagaccacggcgaccaagaccacggcgaagaagaccaccgcgaagaag
acgacggccgcgaagaagaccgcggccaagaaggcgccggccaagtcgacggccgagaac
tcctga
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