Nocardia farcinica NCTC11134: ERS450000_05244
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Entry
ERS450000_05244 CDS
T04524
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nfr
Nocardia farcinica NCTC11134
Pathway
nfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ERS450000_05244 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfr03019
]
ERS450000_05244 (deaD)
03009 Ribosome biogenesis [BR:
nfr03009
]
ERS450000_05244 (deaD)
Enzymes [BR:
nfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ERS450000_05244 (deaD)
Messenger RNA biogenesis [BR:
nfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ERS450000_05244 (deaD)
Ribosome biogenesis [BR:
nfr03009
]
Prokaryotic type
rRNA helicases
ERS450000_05244 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
HEM4
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
CRY82956
UniProt:
A0A0H5PKJ3
LinkDB
All DBs
Position
p2:complement(1876639..1878447)
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AA seq
602 aa
AA seq
DB search
MSTNQVDSVPGDDDRDSGGAESGSGSAGPSFADLGIDDRILRAIADVGYESPSPIQAATI
PPLLDGADVVGLAQTGTGKTAAFAIPILMGLEVTGRQPRALVLAPTRELAIQVAEAFGRY
AAHMPGLHVLPIYGGQSYGVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLSQLQYLVLDE
ADEMLKMGFQEDVERILADTPREKQVALFSATMPAAIRKISKQYLREPVEITVKAKTQTN
TNITQRWVQVSHQRKLDALTRVLEVEPFEAMIIFVRTKQGTEELAEKLRARGFSAAAING
DIAQNQRERTIGQLKSGALDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTG
RAGRSGQALLFVAPRERHLLKAIERATRHPLEEMQLPSVEDVNAQRVSKFGDAITENLSS
ANLPLFRKLIEDYEREHNIPLVDIAAALAVGSYDGDNFFMEAEPEPERRERVPRERPARR
FDEERGGGSHHRATGTELATYRISVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDH
SLVELPAQLPPETLEALRRTRISGVLIQLQLDQGPPAQRAFSRGPRRDRDAGKRPERRKP
RS
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccaatcaggtcgacagcgttcctggcgacgacgacagggactcgggcggagcc
gaatccggttccggctcggccggcccgtccttcgccgacttgggcatcgatgaccgcatc
ctgcgggcgatcgccgatgtcggttacgaatccccctcgccgatccaggcggcgaccatt
cccccactgctcgacggcgccgacgtcgtcggcctggcgcagaccggcaccggtaagacc
gccgcgttcgccatccccatcctgatgggcctcgaagtgaccggcaggcagccgcgcgcg
ctcgtgctcgcaccgacccgggaactggccatccaggtcgccgaggcgttcggccgctac
gccgcgcacatgcccggtctgcatgtgctgccgatctacggcggccagagctacggcgtg
cagctgtccgggctgcgccgcggcgcgcacgtcgtggtcggtacgcccggccgggtgatc
gatcacctggagaagggcaccctcgacctgtcccagctgcagtacctggtgctggacgag
gccgacgagatgctgaagatgggcttccaggaagacgtcgagcgcatcctcgccgacacc
ccgcgcgagaagcaggtggcgctgttctcggccaccatgcccgcggcgatccggaagatc
tccaagcagtacctgcgcgagccggtcgagatcaccgtcaaggccaagacccagaccaac
accaacatcacccagcgctgggtgcaggtgtcgcatcagcgaaaactcgacgcgctcacc
cgggtgctcgaggtggagccgttcgaggcgatgatcatcttcgtccgcaccaagcagggc
accgaggaactcgccgagaagctgcgcgcccgcggattctccgcggcggccatcaacggc
gacatcgcgcagaaccagcgcgagcgcaccatcggccagctcaagtccggcgcgctggac
atcctggtcgccaccgacgtcgccgcgcggggcctggacgtcgaccgcatctcgcacgtg
gtcaactacgacatcccgcacgacaccgagtcgtacgtgcaccgcatcggccgcaccggc
cgcgccgggcgcagcgggcaggcgttgctgttcgtcgccccgcgcgagcggcatctgctc
aaggccatcgagcgcgccacccggcatccgctcgaggagatgcagctgcccagcgtggag
gacgtgaacgcgcagcgggtcagcaagttcggcgacgccatcaccgagaatctgtcctcg
gcgaacctgccgctgttccgcaagctcatcgaggactacgagcgcgagcacaacattccg
ctcgtcgacatcgcggccgcgctggccgtgggctcctacgacggcgacaacttcttcatg
gaggccgaaccggaacccgaacggcgcgaacgtgttccgcgggagcggccggcccggcgg
ttcgacgaggaacgcggcggcggctcgcaccatcgggccaccggcaccgaactggccacc
taccggatcagcgtcggcaagcggcaccgggtggtgccgggcgcgatcgtcggcgccatc
gccaacgagggtggcctgcggcgcagcgatttcgggcacatcagcatccggcccgaccac
agcctggtcgagctgcccgcgcagctgccccccgaaacgctggaggcgttgcggcgcacc
aggatcagcggcgtcctcatccagttgcagctggaccagggaccgcccgcgcagcgcgcg
ttcagccgcgggccgcggcgcgaccgggacgcgggcaaacgaccggagcgacgcaagccc
cgatcctga
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