Nocardia farcinica NCTC11134: ERS450000_05449
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Entry
ERS450000_05449 CDS
T04524
Symbol
recQ_3
Name
(GenBank) ATP-dependent DNA helicase recQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nfr
Nocardia farcinica NCTC11134
Pathway
nfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ERS450000_05449 (recQ_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfr03019
]
ERS450000_05449 (recQ_3)
03400 DNA repair and recombination proteins [BR:
nfr03400
]
ERS450000_05449 (recQ_3)
Enzymes [BR:
nfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ERS450000_05449 (recQ_3)
Messenger RNA biogenesis [BR:
nfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ERS450000_05449 (recQ_3)
DNA repair and recombination proteins [BR:
nfr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ERS450000_05449 (recQ_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
CRY83347
UniProt:
A0A0H5P6Q2
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All DBs
Position
p2:2112593..2114458
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AA seq
621 aa
AA seq
DB search
MDHPDAFSPATDAPSGAGIGAAQEVLRRVFGYDSFRGDQAAIVEHVIGGGDALVLMPTGG
GKSLCYQVPALVRPGVGVVVSPLIALMQDQVDALSALGVRAGFLNSTQFPDERATVEAQF
LAGELDLLYLAPERLRLESTARLLDRGTVALFAIDEAHCVAQWGHDFRPDYLALSMLHER
WPDVPRIALTATATEKTRDEIIHRLDLGSARRFVASFDRPNIQYRIEPKNRAERQLLDFI
RTEHPGDAGIVYCLSRNSVEKTAAFLNENGIGAVPYHAGLDNRTRAANQSRFLREDGLVV
VATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPATAWMVYGLNDVVQQRK
LIDSSEGDAAHRRQLQLHLDAMLALCETVDCRRAQLLAYFGQHGTGCGNCDTCLNPPESW
DGTVAAQKLLSAVLRLDRERGQAFGAGHVLDILLGKKNPKVLQYDHHELTVFGVGADLRD
TEWRGVVRQLLAQGLLAVRGDYGVLTLTPASEEVLFGGRKVMLRREPERPVKQARGGKAA
RAVVADLPAADVPVFEKLREWRAATAKEQGVPAYVVFHDATLREIAARKPTTLAELGGVG
GVGENKLAKYGQQVLDVLAAA
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
gtggatcaccccgacgccttctcgcccgccaccgacgccccctccggggccggaatcggt
gcggcacaagaggttctgcggcgcgtcttcgggtacgacagcttccgcggcgaccaggcg
gccatcgtcgagcacgtcatcggcggtggcgacgccctggtgctgatgccgaccggcggc
ggcaagtcgctgtgctaccaggtgcccgcgctggtgcggcccggtgtcggggtggtggtc
tcgccgctcatcgcgttgatgcaggaccaggtcgatgccctgtccgcgctgggcgtgcgc
gccggcttcctcaactccacccagttccccgacgagcgcgccaccgtcgaggcgcagttc
ctggccggggagctcgacctgctctacctcgccccggagcggctgcggctggagtccacc
gcgcggctgctcgaccgtggcacggtcgcgttgttcgccatcgacgaggcgcactgcgtc
gcgcagtggggccacgacttccgccccgactacctggcgctgtcgatgctgcacgagcgc
tggccggacgtgccgcgcatcgcgctcaccgccaccgccaccgagaagacccgcgacgag
atcatccaccggctcgacctcgggtcggcgcgccgcttcgtcgccagcttcgaccggccc
aacatccagtaccgcatcgagccgaagaaccgcgccgagcggcaactgctcgatttcatc
cgcaccgagcaccccggcgacgcgggcatcgtgtactgcctctcgcgcaactccgtggag
aagaccgccgccttcctgaacgagaacggcatcggggcggtgccgtatcacgcgggcctg
gacaaccgcacccgcgcggcgaaccagtcccggttcctgcgcgaggacggcctcgtggtg
gtcgccaccatcgccttcggcatgggtatcgacaagccggacgtccgcttcgttgcccat
ctcgacctgcccaaatcggtggagggctactaccaggagaccggtcgcgcgggccgcgac
ggactgcccgcgaccgcgtggatggtctacggcctcaacgacgtggtgcagcagcgcaaa
ctcatcgactcctccgagggcgacgccgcgcaccgcaggcagttgcagctgcatctggac
gcgatgctcgcgctgtgtgaaaccgtggactgccgccgtgcgcaactgctggcctacttc
ggccagcacggcaccggctgcggcaactgcgacacctgcctgaatccacccgaatcctgg
gacggcaccgtggccgcccagaaattgctctcggcggtgctgcggctcgaccgggaacgc
ggccaggccttcggcgcgggccacgtgctcgacatcctgctcggcaagaagaaccccaag
gtgctgcagtacgaccaccacgaactgacggtgttcggtgtcggtgccgatctgcgcgac
accgagtggcgcggcgtggtgcgacaactcctggcacaggggttgctcgcggtgcgcggc
gactacggggtgctgacgctcaccccggccagcgaggaggtgctcttcggcggccgcaag
gtgatgttgcggcgcgaacccgagcgcccggtcaagcaggcgcgcggcggtaaggccgcg
cgcgcggtggtcgccgatctgcccgccgccgacgtgccggtgttcgagaagctgcgcgaa
tggcgggccgccacggccaaggaacagggggtgcccgcctacgtcgtcttccacgacgcg
acgctgcgcgagatcgctgcgcgcaagccgaccacgctggccgagctcggcggcgtcggc
ggggtcggcgagaacaagctggccaagtacggtcagcaggtgctcgacgtgctcgccgcc
gcatga
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