Nonomuraea fuscirosea: OIE67_28025
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Entry
OIE67_28025 CDS
T09742
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nfs
Nonomuraea fuscirosea
Pathway
nfs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OIE67_28025 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfs03400
]
OIE67_28025 (ligD)
Enzymes [BR:
nfs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OIE67_28025 (ligD)
DNA repair and recombination proteins [BR:
nfs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OIE67_28025 (ligD)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
WSA47936
LinkDB
All DBs
Position
6144543..6145553
Genome browser
AA seq
336 aa
AA seq
DB search
MSRLPAYSPMLAQLGTLTSVQGADWAVEMKWDGVRALAYVEDGAVHLMSRNGKDITPAYP
ELQLMAGATGRRPAVIDGEIVAFDEAGRPSFEALQPRMHQRNPVAVAELARTTPVTFMAF
DLLHLDDDSVIARPYTERRELLESTLTPGFRWQVPVWFADHAARAFDSSRQLGLEGVVCK
RMTSPYRPGRRSGEWTKVKNVSTVEVVIGGWKPGGGRRSGTIGSLLLGAYDPRGRLRYVG
HVGTGFTESMLRDLLERLTPLERRDPPFGEPVPREHARDAHWVEPRVVGEVQYAEVTGDG
RLRHPSWRGLRPDREPAEASTNEILPPNTTGDAAAG
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggctgccggcctactcgccgatgctggcccagctcggcaccctgacctccgtc
cagggtgcggactgggccgtggagatgaaatgggacggagtgcgcgccctcgcctacgtc
gaggacggcgccgtccacctgatgtcgcgcaacggcaaggacatcacccccgcctacccc
gaactccagctcatggccggcgccaccggccggcgccccgccgtgatcgacggggagatc
gtcgccttcgacgaggccgggcggcccagcttcgaggcgctgcaaccccgcatgcaccag
cgcaaccccgtcgccgtggcggagctcgccaggaccacgcccgtcacgttcatggccttc
gacctgctccacctcgacgacgacagcgtcatcgcgcgcccctacaccgagcggcgcgaa
ctcctggagagcacgctcacgccgggcttccgctggcaggtgcccgtctggttcgccgac
cacgccgcgcgggccttcgactcctcgcggcaactcgggctcgaaggggtcgtctgcaaa
cgcatgacctcgccgtaccggcccggccggcgcagcggcgaatggacgaaggtcaagaac
gtcagcaccgtcgaggtcgtcatcggcggctggaaacccggcggcggacgccggtcgggg
acgatcgggtcactgctgctcggcgcgtacgacccgcgcgggcggctgcgctacgtcggc
cacgtcggcaccggcttcaccgagtccatgctgcgcgacctgctcgaacggctcacgccc
ctggaacgccgcgacccgccgttcggcgagccggtgccgcgcgagcacgcccgcgacgcg
cactgggtggagccccgggtggtcggcgaggtgcagtacgccgaggtcaccggcgacggg
cggctgcggcacccgtcctggcgcgggctgcggcccgaccgcgaaccggccgaggcgagc
acgaacgagatcctgcccccgaacacgaccggcgacgccgccgccggctga
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