Nonomuraea fuscirosea: OIE67_54040
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Entry
OIE67_54040 CDS
T09742
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nfs
Nonomuraea fuscirosea
Pathway
nfs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OIE67_54040 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfs03400
]
OIE67_54040 (mfd)
Enzymes [BR:
nfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OIE67_54040 (mfd)
DNA repair and recombination proteins [BR:
nfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OIE67_54040 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WSA52826
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All DBs
Position
11692717..11696205
Genome browser
AA seq
1162 aa
AA seq
DB search
MSLSGLLDLVRADPKLTAALEEGGDVALIAPSALRPFGVAALAGHDQRTVLAVTATGREA
EDLAAALTSLIEPGSVAVFPAWETLPHERLSPRSDTVGQRLAVLRRLAHPVKGDTAAGPL
SVIVAPVRALLQPIVQGLGDLEPIRLRAGDDADLDEVVANLVTNGYHRVDMVEKRGEVAV
RGGLLDVFPPTEEHPLRLEFWGDTVEEIRWFKVADQRSLEAAEDGLFAPPCRELLLNDEV
RERARALAEEHPALAEVLDQLADGTPVEGMEAFAPVLAGEMDLLLDHLPARSAVFVCDPE
RIRGRAEELVRTSQEFLEASWINAAAGGEAPIDLGAAAFRSLEEIRDHADALGQPWWTIA
PFGNGVELDAHDSEAYRGDTAKALADIKGWLAEDKAVVLLSEGHGPAERMVELLKGVDVP
ARLHQFLDKAPEAKVVHVSTGLIEHGFITPGLAVLTHLDLVGQKASTKDMRRLPSRRRNM
VDPLQLKVGDHVVHEQHGVGRYVEMVQRTVQGATREYLVIEYAKGDRLYVPTDQLDEVTR
YVGGEAPTLNRMGGADWAKAKSRAKKAVKEIAGELIRLYSARMASPGHAFGTDTPWQREM
EDAFPYAETGDQLEAIDEVKRDMERGVPMDRLICGDVGYGKTEIAVRAVFKAVQDGKQVA
VLVPTTLLVQQHMSTFAERFSSFPVAIRAVSRFQTDGEVKGTLEGLRSGAVDVVIGTHRL
LSPEVRFKDLGLIIIDEEQRFGVEHKEAMKHLRTQVDVLAMSATPIPRTLEMGLTGIREM
STILTPPEERHPILTFVGPYEEKQIGAAIRRELMRDGQIFFVHNRVASINRVAARLRELV
PEARIAVAHGQMNEHQLEKIMVGFWEREYDLLVSTTIVESGLDVPNANTLIVDRADNYGL
SQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATISQHTEMGAGMYVAMKDLEIR
GAGNVLGAEQSGFIAGVGFDLYVRLMAEAVQEQKAKLTGAEVQEEQHDVKVELPINAHIP
HDYVTSERLRLEAYKRIAAIVTPADIGEVRDELTDRYGKPPAEVENLLEVAGFRIRARAA
GLTDVTLQGQNIKFGPARLRESQQVRLDRLYKKAIYKQAAETLLVPVPKTKPLGGQPLRD
LDLLKWCGDLVEAMFLEPARVS
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgagtctttccggactacttgaccttgttcgcgccgacccgaaactgaccgccgctctc
gaagagggcggcgacgtcgcgttgatcgcgccgtccgcgctgcgcccgttcggcgtggcc
gcgctggccgggcacgaccagcgcaccgtgctggccgtcaccgcgaccgggcgtgaggcg
gaagacctcgccgccgcgctgaccagcctcatcgagcccggctccgtggcggtgttcccg
gcctgggagacgctgccgcacgagcggctctcgccgcgctccgacaccgtcgggcagcgg
ctggcggtgctgcgcaggctggcccacccggtcaagggcgacaccgccgccgggccgctc
agcgtgatcgtggcgccggtcagggcattgctgcagccgatcgtgcagggcctcggcgac
cttgagcccatcaggctgcgcgccggtgacgacgccgacctcgacgaggtcgtcgccaac
ctggtcaccaacggttaccaccgcgtggacatggtggagaagcgcggcgaggtggccgtg
cgcggcgggctgctcgacgtgttcccgccgaccgaggagcatccgctgcggctggagttc
tggggcgacacggtcgaggagatccgctggttcaaggtggccgaccagcgctcccttgag
gcggccgaggacggcctgttcgcgccgccctgccgcgagctgctgctgaacgacgaggtc
agggagcgggcgcgcgccctggccgaggagcatccggcgctggccgaggtgctcgaccag
ctcgccgacggcacgccggtcgagggcatggaggcgttcgcgcccgtgctggccggcgag
atggacctgctgctcgaccacctgccggccaggtcggccgtgttcgtgtgcgaccccgag
cggatcaggggccgggcggaggagctcgtccgcacctcgcaggagttcctcgaagcctcc
tggatcaacgccgcggccggcggcgaggcgcccatcgacctcggcgcggccgcgttccgc
tcgctggaggagatccgcgaccacgccgacgcgctcgggcagccgtggtggacgatcgcg
cccttcggcaacggcgtcgagctggacgcccacgactccgaggcctaccgcggcgacacc
gccaaggcgctggccgacatcaagggctggctggccgaggacaaggccgtcgtgctgctc
agcgagggccacgggccggccgagcgcatggtcgagctgctcaagggcgtggacgtgccc
gccaggctgcaccagttcctggacaaggcgcccgaggcgaaggtcgtccacgtctcgacc
ggcctgatcgagcacggcttcatcacccccggcctggccgtgctcacccacctcgacctg
gtcggccagaaggcctccaccaaggacatgcgccggctgccctcgcgccgccgcaacatg
gtggacccgctgcagctcaaggtcggcgaccacgtggtgcacgagcagcacggcgtcggc
cgctacgtcgagatggtgcagcgcacggtgcagggcgccacccgcgaatacctcgtcatc
gagtacgccaagggcgaccggctctacgtgccgaccgaccagctcgacgaggtcacccgc
tacgtcggcggcgaggcgcccacgctcaaccgcatgggcggcgccgactgggccaaggcc
aagtcccgcgccaagaaggcggtcaaggagatcgccggcgagctgatcaggctctactcc
gcccgcatggcctcgccgggacacgcgttcggcacggacacgccctggcagcgcgagatg
gaggacgccttcccctacgccgagaccggcgaccagctcgaagccatcgacgaggtcaag
cgcgacatggagcgcggcgtcccgatggaccggctgatctgcggcgacgtcggctacggc
aagaccgagatcgcggtgcgggcggtgttcaaggcggtgcaggacggcaagcaggtcgcg
gtgctggtgcccacgacgctgctggtgcagcagcacatgtccaccttcgccgagcgcttc
tccagctttcccgtcgcgatcagggcggtctccaggttccagaccgacggcgaggtcaag
ggcacgctcgaagggctgcgctcgggcgcggtcgacgtcgtgatcggcacccaccggctg
ctcagccccgaggtcaggttcaaggacctcggcctgatcatcatcgacgaggagcagcgg
ttcggcgtcgagcacaaggaggccatgaagcacctgcgcacgcaggtcgacgttctggcc
atgtccgccacgccgatcccgcgcacgctggagatgggcttgaccggcatccgcgagatg
tccaccatcctcacgccgcccgaggagcggcatccgatcctcacgttcgtggggccgtac
gaggagaagcagatcggggccgcgatccggcgcgagctgatgcgcgacgggcagatcttc
ttcgtgcacaaccgggtcgcctcgatcaaccgggtggccgcgcggctgcgcgagctggtg
cccgaggcgcgcatcgcggtcgcgcacgggcagatgaacgagcaccagctcgaaaagatc
atggtcggtttctgggaacgcgagtacgacctgctcgtctccaccacgatcgtcgagtcc
gggctcgacgtgcccaacgccaacacgctgatcgtggaccgggccgacaactacggcctg
tcgcagctgcaccagctgcgcgggcgcgtcggacggggcagggagcgcggctacgcctac
ttcctctacccgccggagaagccgctgaccgagaccgcccacgagcggctggccacgatc
tcgcagcacaccgagatgggcgccggcatgtacgtcgccatgaaggacctggagatccgc
ggcgcgggcaacgtgctgggcgccgagcagtcgggcttcatcgcgggcgtgggcttcgac
ctgtacgtccggctcatggccgaggccgtgcaggagcagaaggccaagctgaccggcgcc
gaggtgcaggaggagcagcacgacgtcaaggtcgagctgccgatcaacgcccacatcccg
cacgactacgtgacctccgagcggctgcggctggaggcgtacaagcggatcgcggccatc
gtcaccccggccgacatcggcgaggtgcgcgacgagctgaccgaccgctacggcaagccg
ccggcggaggtggagaacctgctggaggtggccgggttccggatcagggcgcgcgcggcc
gggctcaccgacgtcacgctgcagggccagaacatcaagttcggcccggccaggctgcgc
gagtcgcagcaggtccggctcgaccggctgtacaagaaggcgatatacaagcaggcggcg
gagacgctgctggtgcccgtgcccaagaccaagccgctgggcgggcagccgctacgcgac
ctcgacctgctcaaatggtgcggcgatctggtcgaggcgatgttcctcgagcccgcccgg
gtaagctag
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