Nonomuraea fuscirosea: OIE67_55075
Help
Entry
OIE67_55075 CDS
T09742
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nfs
Nonomuraea fuscirosea
Pathway
nfs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OIE67_55075 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfs03400
]
OIE67_55075 (ligD)
Enzymes [BR:
nfs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OIE67_55075 (ligD)
DNA repair and recombination proteins [BR:
nfs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OIE67_55075 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
MepB-like
Motif
Other DBs
NCBI-ProteinID:
WSA53015
LinkDB
All DBs
Position
complement(11914715..11915587)
Genome browser
AA seq
290 aa
AA seq
DB search
MKVPVKVDGRELALSNLDKVLYPEYGFTKAEIIDYYSRIAPVLLPHLEGRPLTVKRYPNG
VTGQFFFEKNAPDHTPDWVRRVSLPVPGSTKNRETIDFAVVEDLPTLVYYANLAALELHV
PQWRVDEDGAALPPDTLVFDLDPGPPATIVECTRVALMLREALKEEGLTAVPKTSGNKGM
QLYADWDCREEPSAYAKRLAQLLAKEHPDEVVSVMARKLRPGKVFIDWSQNNPAKTTVAP
YSLRAGERPTVSTPLTWKEVESCEDPDDLVFTAPDVLARVEKRGDLFRRA
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtgccggtcaaggtggacggccgcgagctggccctgagcaacctggacaaggtc
ctctatcccgagtacggcttcaccaaggccgagatcatcgactactacagccgcatcgcg
cccgtcctgctgccgcacctcgaaggcaggccgctgaccgtcaagcgttaccccaacggc
gtcaccggccagttcttcttcgagaagaacgcccccgaccacacgcccgactgggtcagg
cgggtcagcctgcccgtgcccggcagcaccaagaaccgcgagacgatcgacttcgccgtc
gtggaggacctgcccacgctcgtctactacgccaacctcgccgcactcgaactgcacgtc
ccccagtggcgcgtggacgaggacggcgcggcgctgccgcccgacacgctcgtcttcgac
ctcgacccggggccgcccgcgacgatcgtcgagtgcacgcgcgtggcgctcatgctgcgc
gaggcgctgaaggaggagggcctcacggccgtgccgaagaccagcggcaacaagggcatg
cagctgtacgcggactgggactgccgcgaggagccctccgcgtacgccaagaggctggcc
cagctcctggccaaggagcatcccgacgaggtcgtcagcgtgatggcgaggaagctgcgt
ccggggaaggtgttcatcgactggagccagaacaacccggccaagaccaccgtcgcgccc
tactcgctgcgggccggagaacggcccaccgtgtcgacgccgctcacgtggaaagaggtc
gagagctgcgaagatcctgatgatctggttttcaccgcgcccgacgtactcgccagagtg
gagaagcgcggcgaccttttccgccgggcgtag
DBGET
integrated database retrieval system
