Candidatus Nanosynbacter featherlites: FBF37_02085
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Entry
FBF37_02085 CDS
T08029
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nft
Candidatus Nanosynbacter featherlites
Pathway
nft03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nft00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FBF37_02085 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nft03021
]
FBF37_02085 (rpoC)
03400 DNA repair and recombination proteins [BR:
nft03400
]
FBF37_02085 (rpoC)
Enzymes [BR:
nft01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FBF37_02085 (rpoC)
Transcription machinery [BR:
nft03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FBF37_02085 (rpoC)
DNA repair and recombination proteins [BR:
nft03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FBF37_02085 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Histone_HNS_N
Biotin_lipoyl
RPOC_hybrid
Scm3
TadZ_N
Motif
Other DBs
NCBI-ProteinID:
QCT42251
UniProt:
A0A4P9A380
LinkDB
All DBs
Position
complement(394881..398726)
Genome browser
AA seq
1281 aa
AA seq
DB search
MRKMAQFAFNATGISDFDAVRLVVASPEDILKWSHGEVTKPETINYRTQKPERDGLFCER
IFGPVKDINPHDSKLKGVRSREAAVDKNGELVTKSIVRRERMGHIQLAAPVAHIWFMRGT
PSAMSQLLGMTVRNLERVAYFATYVILKVDEATRDQYLADLEAETEAGRAAIKIRYEKMA
EEDGADIKALAKEQSREVEELNEKYTTRKAQLDSLNKGALLSETDYRNLPEEYDELIEVG
MGASALKTLLDEIDLPQLIAELTEEAESAKGQREKKILKRLKMLESMHAAGIKPSSLTLS
VLPVIPPDLRPMVALSGGRFATSDLNDLYRRIINRNNRLKKLVELNAPEVIQRNEKRMLQ
EAVDALIDNAAARGGRAVSSTGGRRRLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVV
GPKLKIHQCGLPKQMALELFKPFVISWLIKGEFAHNIRSATRLIESGEAVVWDALDAVIA
GKYVLLNRAPSLHRLSIQSFQPVLVEGKAIQLHPLVCAGFNADFDGDQMAVHLPLSKEAQ
AEARELMSATANLLKPADGAPVLHISQDIVLGNYYLTYDKPQAQTDNIKSFSSVYEAELA
YDKGDIHLQTPIRIFAKGKVRQTTLGRVFFNEILPEDFPYDNNVQTKKQLKKVLAQIFNK
YGAEETAKIADRMKGQAFRFATTAAVSTGMTDYVHFDEIPEFVAEGDAKAALISEQFDQG
LITEDERYNLTVSAWRNVDNKITAFLKDQLAHMDTSISMMVNSGARGDISNVKLASAMIG
IQMDATNHEIELPIRSSYTGGLSSLEAFVATRGARKGLIDTALKTADSGYLTRRLVDVAQ
DVFTVEDVEGDDEGYAIYRSETEETMIDFSNRLAGRYAAETIPGHVNKDELITREIADSI
DDDESIQSVKIQSVLSTNNLNGIPQRSYGVDMSTGKLVGNHQPVGVIAAQSVGEPGTQLT
LRTFHNSGVAGGDITQGLPRVEELFEARTPKGQAFVTEIAGLVDVWEDGKKYIVQVTPES
GKVERLPLDGRTIVVKAGSSVKAGDVLATGEDDTRPLIAPFDGVVEAAEDTLVIAAEAGA
PARYEIPGTMQLVVKANDVVEAGDRLTAGSLNLHDLMRLKGVEAAQRYIINEVLRIYAAQ
GQDVADKHLEIIVRQMFSRVQIEDAGDSDFVTGDIVSKAAVVNTNKQLATEGKNLISYTQ
LLLGITKVSIWSDSWLSAASFQDTTRVLINAAVSGRADHLHGLKENVIIGRKIPVGTGAV
EEDEELAEDNTEELTEEFSEI
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaagatggcgcaatttgcattcaatgctactggcattagcgattttgatgcagta
cgcttagtggttgccagcccagaagatatcctgaaatggagtcacggtgaagttactaag
ccagaaacgatcaactatcgtactcaaaagccagagcgtgacggtttgttctgtgaacga
attttcggtccggttaaggacatcaatccacacgactcaaagctaaaaggtgttcgttca
cgcgaagctgcggttgataagaatggtgaactcgtcaccaagtcaatcgttcgccgtgag
cgcatgggtcacatccagttggcggcgccagtcgcccacatctggtttatgcgcggtacg
ccaagcgccatgagccaattgctcggcatgacggttcgtaacttggagcgagtagcttac
tttgcgacctacgtcattttgaaggttgatgaagcaacccgtgatcaataccttgcagac
ttggaagctgaaacagaagccggtcgtgctgccatcaagattcgatacgaaaaaatggca
gaagaagatggcgctgacatcaaagctttggctaaggaacagagtcgtgaagttgaagaa
ttgaacgaaaaatacaccactcgtaaagcgcagcttgacagtttgaacaagggcgcgctg
ttgtctgaaactgactatcgtaacttgccagaagaatacgatgagctcattgaagttggc
atgggtgcttcagcgttgaagacgttactggatgagattgacctaccgcagctgattgcg
gaattgactgaagaagctgagagcgccaagggtcagcgtgagaagaaaattctcaagcgc
ctgaagatgctggagagcatgcacgccgctggcatcaagccaagtagcttgacgctgagc
gtattgccagtcatcccaccagacctccgtccaatggtggccctcagtggtggtcggttt
gcaacctcagacttaaacgacttgtaccgccgcatcatcaaccgtaacaatcgtttgaag
aaattggttgagctcaatgcaccagaagtgattcagcgcaatgaaaagcgtatgttgcag
gaagcggttgatgcgttgatcgacaatgctgctgctcgtggtggtcgtgccgtcagttcg
actggtggtcgccgccgtctgaagtcaatttctgacatgctgaagggtaagcaaggacgt
ttccgccaaaacctgctcggtaagcgtgtggattactctggacgttcagtgatcgtcgtt
ggtccaaaactgaagattcatcagtgtgggttgccaaagcaaatggcacttgaactattc
aagccattcgttatcagttggctgatcaagggtgaatttgctcacaacatccgctcagca
acccggttgatcgaatcaggcgaagcagttgtatgggacgcgctggatgcagtgattgca
ggcaaatacgttctgttgaaccgtgctccatcactccaccgtttgtcaatccaatccttc
cagccagttttggttgaaggcaaagccatccaactgcatccgctagtttgtgccggcttt
aacgctgactttgacggtgaccagatggccgttcacttaccactctctaaagaagcacag
gctgaagcgcgtgagttgatgagcgcaactgctaacctattgaagcctgctgacggtgcg
ccagtcttgcacatctcgcaggacatcgtgctcggtaactactacctgacctatgacaag
ccacaggcgcagactgacaatatcaagtcatttagctcagtttatgaagcagagctggcg
tacgacaagggcgacattcatttgcagacgccaatccggatttttgctaagggcaaggta
cgtcagacaactttgggccgtgtcttctttaacgagatcctgccagaggacttcccatat
gacaacaacgttcagaccaagaagcagctgaagaaagtattggcacaaatcttcaacaag
tacggtgccgaggaaactgccaagatcgctgaccgcatgaaggggcaggccttccgcttc
gcgacaactgcggccgtatcaaccggtatgaccgactacgtgcactttgacgaaatccct
gagtttgtggctgagggtgacgccaaggcggctttgatttctgagcagttcgaccaaggt
ctgatcaccgaggacgagcgctacaacttgacagtcagtgcgtggcgaaacgtcgacaat
aagattaccgcgttcttgaaggatcaattggcgcacatggacaccagtatctccatgatg
gttaactctggtgcacgtggtgacatctccaacgtcaagctggcgagcgccatgatcggt
atccagatggacgcgaccaaccacgaaattgagttgccaatccgtagctcctacactggt
ggtctgtccagccttgaggcctttgtggcgacccgtggtgcgcgtaagggtctgatcgac
accgcgctgaagactgccgactcaggctacctgacgcgacgtttggtcgacgtggcacag
gacgtcttcacggttgaggacgttgaaggtgacgacgaaggttacgcaatctaccgttca
gaaactgaggaaacgatgatcgacttctcgaaccgcttggctggtcgttacgccgccgag
acaattccgggtcacgtcaacaaggacgaattgatcacccgggaaatcgctgactcaatt
gatgatgatgaaagtatccagagcgtcaagattcaatcagtcctgtcaaccaacaacctc
aacggcatcccgcagcgcagctacggtgttgatatgtcaactggtaaattggtcggtaat
catcagccagtcggtgtcatcgctgctcagtcagtcggtgagccaggtactcagttgacc
ctgcgtactttccacaactctggtgtggctggtggtgacatcacccagggtctgccgcgt
gttgaagaattgttcgaggcgcgtacaccaaagggtcaggcgtttgttacggagattgcc
gggttagttgacgtttgggaagatggcaaaaagtacatcgtccaagttaccccagaatct
ggtaaggttgagcgcttgccgctagacggccgaaccatcgtggtcaaggccggttcaagt
gtcaaggctggcgacgtattggcaactggcgaagatgacactcgtccactaattgcacca
tttgacggtgtagttgaggcggcagaagacaccttggtcatcgctgctgaagctggcgca
ccagctcgttacgaaatcccaggcaccatgcagttggtcgtaaaagctaatgacgttgtc
gaggctggtgaccgcttgacagctggttcattgaacctgcacgacttgatgcgcctgaag
ggtgtcgaggctgctcagcgctacatcatcaacgaagtcctgcgtatttacgctgctcag
ggtcaagacgtggccgacaagcacctggagatcatcgttcgacagatgttcagccgcgtc
caaatcgaagatgcgggtgatagcgacttcgtgactggcgacatcgtctccaaggctgcg
gtggtgaacaccaacaagcaactggctactgagggtaagaacctcatcagctacactcag
ctgctgctcggtatcaccaaggtgtccatctggagcgactcatggctatcagctgcgtcc
ttccaggatactactcgcgtgctgatcaacgctgccgtatctggtcgcgctgaccacttg
cacggtctcaaggagaacgtcatcatcggccgcaagatcccagtgggaacgggcgctgtt
gaagaagacgaagagttagctgaagataacactgaagaattgactgaagaattctcagag
atctaa
DBGET
integrated database retrieval system
