Candidatus Nanosynbacter featherlites: FBF37_02905
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Entry
FBF37_02905 CDS
T08029
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
nft
Candidatus Nanosynbacter featherlites
Pathway
nft03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nft00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
FBF37_02905 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nft03400
]
FBF37_02905 (sbcB)
Enzymes [BR:
nft01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
FBF37_02905 (sbcB)
DNA repair and recombination proteins [BR:
nft03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
FBF37_02905 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FBF37_02905 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FBF37_02905 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QCT42400
UniProt:
A0A4P9A3K4
LinkDB
All DBs
Position
complement(559270..560688)
Genome browser
AA seq
472 aa
AA seq
DB search
MAETFFFYDLETSGLNPRQDRIMQFAGQRTDMSLEPIGEPYNLLVTLNDDTLPSPDALMV
TGITPQKTVEEGYTEVQFARMLCEEIFTPETIAVGFNNIRFDDEFIRHLLWRNFHDPYEW
SWKDGRSRWDLLDVVRLTRALRPEGINWPLDDKGEPSNRLELITSANGIAHENAHDALAD
VTALIAVTKLIKQKQPQLYDYLLKMRDKKVVQRLVNVDDKKPFVYASGRYDKEFAKTTVA
FPLTTSRNGGVVVYDLRYDPTPFVGLSAEELSAKLFASWEERQAKDFVKLPVKELQYNRC
PAVAPLGVLEQGDGWRKISLDLETVQKHQNILLDNPDFAEKLRTIFENKPAFKKLPDPEA
QLYDGFLNDRDRLRVEAVRNADERELADFHPEFQDERLTPLLLHYKARNFPRSLSEDDLA
QWEIWRAQHLQAQLPGFMASLQRLAPAATDEQQFILQELQLWAEAVLPAGDL
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaacatttttcttctatgacctagaaactagcggactaaatccgcggcaagat
cggatcatgcagtttgctgggcagcggacggacatgagtctcgagccgattggcgagccg
tacaatctgctggtaacgctgaatgatgacaccttgccgagtcctgatgcgctgatggta
acgggcattacgccgcaaaaaacagtcgaggagggttacaccgaagtgcagtttgctcgg
atgttatgcgaggagatctttacgcctgagactattgcggttggttttaataatattcgg
tttgacgacgaatttatccgccatttgttgtggcgcaattttcatgatccgtacgaatgg
agctggaaagacggtcgctcgcgttgggatttgctggatgttgtgcgattgacgcgggcg
ctcaggccggaaggaatcaattggccgcttgatgataagggtgagccaagcaatcgcctg
gagctgatcactagtgctaatggcatagcacacgaaaatgctcacgatgctttggcggac
gtaacagcgttgattgccgtgacgaaactgatcaagcaaaagcagccgcaactgtatgat
tatttactgaaaatgcgtgacaaaaaagtagtccagcgactggtcaatgtggatgacaaa
aaaccgtttgtctatgccagcgggcgctatgataaggaatttgctaaaactacggtggcc
tttccgctgacgaccagtcgaaacggcggtgtggtcgtctatgatctgcgctatgatccg
acgccgtttgttgggctgagtgcggaggagctgtcggcaaaactatttgcgtcgtgggag
gagcggcaagctaaggatttcgtcaaattgccagtcaaagaattacagtacaatcgctgt
ccggcggtggcgccgctgggtgtgctggaacagggcgatggctggcggaagatctcactt
gatctagagacggtgcaaaagcatcaaaatatactgctggacaacccagactttgccgaa
aaattacggactatttttgaaaacaagccagccttcaaaaaactgcctgatccagaagcg
caattatatgacggctttttgaacgaccgtgaccgcttgcgagtggaggccgtacgcaac
gctgatgaacgtgaattggcggattttcatccagagtttcaggacgaacggttaacgccg
ctgttgctacactacaaagcacgtaattttccgcgctcactcagtgaagatgatttggca
caatgggaaatctggcgggctcagcacctgcaggcacaactgccagggtttatggcgtct
ctgcagcgcttagcgccggcagcgactgacgagcagcagtttatattgcaagaattgcaa
ttgtgggcggaggcggtgttgccggctggcgacttgtga
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