Nothobranchius furzeri (turquoise killifish): 107374728
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Entry
107374728 CDS
T05163
Symbol
skiv2l2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107374728 (skiv2l2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107374728 (skiv2l2)
03041 Spliceosome [BR:
nfu03041
]
107374728 (skiv2l2)
03009 Ribosome biogenesis [BR:
nfu03009
]
107374728 (skiv2l2)
03016 Transfer RNA biogenesis [BR:
nfu03016
]
107374728 (skiv2l2)
Enzymes [BR:
nfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107374728 (skiv2l2)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107374728 (skiv2l2)
Spliceosome [BR:
nfu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107374728 (skiv2l2)
Complex C
U4/U6.U5 tri-SnRNP related factors
107374728 (skiv2l2)
Ribosome biogenesis [BR:
nfu03009
]
Eukaryotic type
Pre-60S particles
Helicases
107374728 (skiv2l2)
Transfer RNA biogenesis [BR:
nfu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107374728 (skiv2l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
107374728
NCBI-ProteinID:
XP_015798436
UniProt:
A0A1A8AXW2
LinkDB
All DBs
Position
sgr02:complement(61246375..61273303)
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AA seq
1035 aa
AA seq
DB search
MSDTFGEGLFSVFDDEQQSSTNKKTPTGVSTETGKVVGKFLGSEKDAGPSTRVKREADLE
VGEDVVFGKRARTDTANDLNLAEFMPQVKVEPVETVEGCSHEVALPADEEYKQLKPRVGK
AAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPI
KALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVIF
DEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTEY
RPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGGGSGGGKWDPRRKG
GTKGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNTDDEKRLVEEVFNN
AVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFA
MGINMPARTVLFTSARKFDGKSHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSPA
IGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVDKIK
TLEEQYHTIEIPNEESVVTYFKIRQQLAKLGKEIQEFIHKPKYCLPFLQPGRLVKVKNED
ADFGWGVVVNFCKKTNVKAATNAEPLYVVEVLLHCSKESVKDAATEAAKPAAAGETGEMQ
VVPVMLHLLTSLSSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIKD
PALKKVIQKVEAFEHRMYTHPLHSDPNLESVYSLCEKKALIAADVRTAKRELKKARTVLQ
MDELKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLAVEQATA
LLSCFVFQENANEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHLM
DVVYAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacacatttggagaaggattatttagcgtgtttgatgacgaacaacaaagttct
acaaacaaaaagacaccaacaggtgtttctacagaaacagggaaggttgtaggtaaattt
ctaggctctgagaaggatgcgggtccatccactcgggtcaagagagaggcagacctggaa
gtaggggaggatgtggtgttcgggaagagggctcgaactgacactgccaatgacctaaat
cttgctgagttcatgcctcaagtgaaggtggagccggttgaaaccgtggaaggatgctca
cacgaggttgctctgcctgctgatgaggagtataaacaactaaaaccaagagttgggaaa
gcagcaaaggaatacccgtttatcctcgaccccttccagcgtgaggccattttatgcatc
gacaacaatcagtcagtgcttgtgtctgcacacacctctgcaggcaaaactgtttgtgca
gagtacgccatcgccctggccctcagagagaagcaaagagtcatcttcaccagcccgatc
aaggccctgtccaaccagaagtacagagagatgtatgaagagtttcaggatgtgggacta
atgactggagatgtcaccatcaacccaaccgcctcctgccttgtcatgacaacagagatc
ttgaggagcatgctgtatcgaggttctgagatcatgagggaggtggcgtgggtcatcttt
gatgagatccattatatgagagacgcagagcgtggtgtggtttgggaagagaccattatt
cttcttcctgacaatgtgcactacgttttcctctccgccaccatccccaatgccaaacag
tttgcagagtggatctgccatttacataagcagccttgccatgtggtttacacggaatac
cggcccactccgctgcaacactacatctttccagcagggggcgatggactccaccttgtg
gtcgatgagaacggtgactttagagaagacaatttcaacaccgccatgcaggtgctgaga
gatgcaggggattctgggggcggcagtggaggcggcaagtgggacccgagacgaaaagga
ggcactaaaggtccatccagtgtttttaagatagtgaagatgatcatggagaggaacttc
cagcctgtcatcattttcagtttcagtaagaaggagtgtgaggcctacgcgctacaggtg
gccaaactggacttcaacacagatgatgagaagcgtctggttgaagaagtgtttaacaac
gccgtggactgcctctccgacgaagacaagaaactgcctcaggtggagcatgtgttgcct
ctgttgaagagagggatagggatccatcatggaggcctcctgccgatcctcaaagaaacc
atagagatcctcttctctgaaggcctgctgaaggccttgtttgccacggagacttttgcc
atgggtataaacatgccggctcggactgtgctcttcaccagtgcacgcaagtttgatggc
aagagtcaccgcttcattacatcaggtgaatacatccagatgtctggccgtgccgggagg
agagggatggatgatagggggattgttattttcatggtggatgagaaaatgagtccagct
atagggaagcagttgctgaagggctcagcagaccctttaaacagtgccttccacctgacc
tacaacatggtgctcaacctgctacgtgtggaggagatcaacccagaatacatgctggag
aagtccttctaccagttccagcactaccgggctctgcccggcgtggtcgacaaaataaag
acacttgaagagcagtaccacaccattgaaatccccaatgaagagagcgtggtcacctac
tttaagataaggcagcagttggccaaactaggtaaagaaatacaggaattcatccacaaa
cccaaatactgcctaccgttcctccagcctgggcgactagtgaaggtgaaaaatgaggat
gctgactttggctggggggttgttgtaaacttttgcaagaagactaatgtgaaggcagcc
acaaacgctgagccgctgtacgtggtggaggttctgcttcactgtagtaaggaaagtgtc
aaagatgctgctactgaagcagccaaacctgctgctgcaggggagactggagagatgcag
gtggtcccagtgatgctccatctcctaacatcactcagttcagttcgtctctacatccct
aaagacttgaggccctttgacaacaggcagctgatgctcaagtccatacaggaggtgcag
aagcgtttcccagatggcgttccgttgctcgaccccatagatgacatgggcatcaaagac
ccggcactaaagaaagtgattcagaaggtggaggccttcgagcaccggatgtacacccac
cccctccacagcgaccccaatctggagtcggtctattctctctgtgagaagaaagctctg
atcgcagcagatgttcgaacggccaagcgagagctgaagaaagctcgaaccgtcctgcag
atggatgagctcaagtgtcggaagagagtcctgaggagacttggcttcgccagtccctct
gatgtcatcgagatgaaagggcgggttgcctgtgagatcagcagcgctgacgagctcctg
ctgacggagatggtgttcaacggcctcttcaacgacctggcggtggaacaggctactgcc
ctgctgtcctgctttgtcttccaggagaacgccaacgagatgccgaagctcacagaacag
ctggctgcacctctcagacagatgcaggagtgtgcgaagcgcattgctaaggtctccgca
gacgccaagctggaggtggacgaggagacatatctgaaccagttcaaaccccacctgatg
gatgtggtctacgcctgggccaacggggccacgtttgctcagatctgcaagatgaccgat
gtctttgaaggaagcatcatccgctgcatgcgccgtctggaggaggtgctgcgacagatg
tgctccgctgctaaagccatcggcaacacagaactggagaacaagttcgcagaaggaata
acgaagatcaaacgagacatcgttttcgctgccagtctgtatctatag
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