Nothobranchius furzeri (turquoise killifish): 107374948
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Entry
107374948 CDS
T05163
Name
(RefSeq) collagen alpha-1(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107374948
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107374948
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107374948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
107374948
NCBI-ProteinID:
XP_015798729
UniProt:
A0A1A7ZG95
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All DBs
Position
sgr02:complement(72039461..72157944)
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AA seq
2004 aa
AA seq
DB search
MDTHIRWKVKRRIRDVHITVAVTLLFLTSWASSAEPADLLKILDFHNLPEGVTRTTGFCS
HRRSSQGPDVAYRVSRDAQLSAPTKQLYPGDAFPEDFSIMATVKPKKGSQSFLLSVYNEQ
GIQQLGLEVGRSPVFLYEDHTGKPSPEDYPLFRGVNLADGKWHRVAISVHKDTITLILDC
KKKATQKLLRSANPIIDTKGIIVFGTRILDEEVFEGDIQQLMIVADHRAAYDYCEHYSHD
CEVAAPEQPQNQDPKVDNYEQYYYEYPYYDDNEGKPFESTAETETIAKDVKVTGDGTVTT
VEEVVRGRSDAAGSSSVSTSSSSSSSSSSSSSSSSSSSRGSSVTGAGKEDTYREETTSYD
DYDAYGNYYDEATPAPGRDTTQRITISSIGTGGELDLGAGARVDLEAGSEIDQKVITIGG
GTTTTIITNKTTLDTSYSDYGNGYDYGVDDYYTNGAGGSSSSVSPGGGSVSVGGGSVSVG
GGSVSVGGGSVSVGGGSASVGGGSASVGGGSASVSGGSVSVGGGSASVGGSSTSGGSSAS
AGTGAGGSIATETSQGIGGEGDYPDVDKFKEEDISEYGDLETYNYDDYPDIKDKVLPAET
NEYFGQVDGARGEKGQKGEPAVIEPGMLLEGPPGPEGPTGLPGPPGPSGPPGSTGDPGER
GLPGRAGLPGADGLPGPPGTVLMLPFRFSSGGDSGHKGPAVSAQEAQMQAIMQQARLAMR
GPTGPMGLTGRTGPLGPPGVPGLKGESGEAGPQGPRGPMGSSGPIGKPGRRGRPGADGAR
GMPGQTGPKGDRGFDGLAGLPGEKGHRGEPGPHGPPGAPGEDGERGDDGEIGPRGLPGEP
GPRGLLGPKGPQGPPGPPGVTGMDGHPGPKGNIGPQGEPGPPGQQGNPGAQGLPGPQGAI
GPPGEKGPTGKPGLPGMPGADGPPGHPGKEGPSGEKGHMGPAGPQGPIGYPGNRGVKGAD
GVRGLKGNKGEKGEDGFPGFKGDMGIKGDRGELGPAGPRGEDGPEGPKGRSGLPGDAGPL
GPNGEKGKLGVPGLPGYPGRQGPKGSQGFQGFPGANGEKGSRGTGGKPGPRGQRGPTGPR
GERGPRGPTGKAGPKGNSGNDGPPGPPGERGLPGPQGPTGFPGPKGPPGPAGKDGLPGHP
GQRGETGFQGKTGPPGPPGVVGPQGPTGETGQMGDRGHPGPPGPPGEHGLPGPAGKEGAK
GDPGPAGPAGKDGPPGQRGFPGDRGLPGPVGAHGLKGNEGPQGPPGPAGSPGERGPAGPA
GPTGLPGRTGPQGPPGTAGEKGGPGEKGPQGPAGRDGIQGPVGLPGPGGPPGPPGEDGDK
GEIGEPGQKGSKGDKGEHGPPGPTGPQGPVGAPGPAGADGEPGPRGQQGMFGQKGDEGSR
GFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGPPGADGPQGPPGGIGNP
GAVGEKGDAGETGEPGLQGEVGPPGPRGERGEKGESGPAGAAGPPGPKGPPGDDGPKGSP
GPSGFPGDPGPPGEPGPAGLDGPAGDKGDDGEAGQPGSPGPTGESGPSGPPGKRGPPGAP
GPEGRQGEKGAKGEPGIEGPQGKTGPVGPQGSPGKPGSEGLRGIPGSVGEQGLPGPPGPD
GPPGPMGPPGLPGLKGDSGVKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPPGSSGPKGDN
GISGPTGPLGPIGPPGLPGPPGPKGAKGSSGQTGPKGETGSPGLPGPPGPPGDVIHPLPL
EAPMKGRTRRNIDASQLVDDAPADASYKDYDDGMEEIFGSLNSLKLEIEQMKHPLGTQSN
PARTCKDLQLCHPDFPDGDYWIDPNQGCSRDSFKVYCNFTAGGESCIYPDKKSEGARLTS
WVKENPGSWFSEFKRGKLLSYVDAEGNPIGVVQMTFLRLLSAAARQNMTYNCYQSVAWYD
QEQDSYDKAIRFLGSNDEEMSYDNNPYIRSLVDGCALKKGYEKTVLEINTPKVEQVPFVD
IMFNDFGGSTQKFGFDVGPVCFIG
NT seq
6015 nt
NT seq
+upstream
nt +downstream
nt
atggatacccatataagatggaaagttaaacggaggataagggacgtccacatcactgta
gcggtgactctgctttttctcacgtcgtgggcgagttcagcggaaccagctgacctcttg
aagattttagattttcacaatttacctgagggtgttacaagaacgacgggtttctgttca
cataggaggtcgtcacaaggacccgatgtggcttacagagtatccagagacgcccagctc
agcgccccaaccaaacagctttacccaggtgatgccttccccgaggatttttccatcatg
gccacagtaaagcccaagaagggcagccagtccttcctgctgtctgtgtacaatgaacaa
ggcatccagcagcttggtctggaagtgggccggtcccccgtgttcctgtacgaggaccac
acaggcaaacccagtccagaagactatcccctcttcagaggagtcaacctggctgatgga
aagtggcatcgagtggccatcagtgtacacaaggacaccatcaccctcattttggactgt
aaaaagaaggccacccagaagctgctccgaagcgctaaccccatcattgatactaaagga
attatagtgtttggaacaagaatacttgatgaagaagtttttgagggagacatccagcag
ctaatgattgtagcagaccaccgtgctgcctatgactactgtgagcactacagtcatgat
tgtgaagtggcagcgccggaacagccacaaaatcaggaccccaaagtcgacaactatgag
cagtactattatgaatacccttattatgacgacaatgaaggaaagccctttgagtcgaca
gctgaaaccgagactatcgcaaaagacgtcaaggtgacaggtgatggcactgtgaccaca
gtagaagaagtcgtaagaggtcgttctgatgctgctggctccagttctgtctccaccagc
tcatcatccagctcatcatccagctcatcatccagctcatcatccagctcatctcgtgga
tcctcagtgactggcgctggaaaagaggacacctaccgagaagagaccactagttacgat
gactatgacgcctatggtaactattacgacgaggccacgcccgcacccggcagggacacc
actcaacgcatcaccatcagcagcatcggcactgggggtgagctggacttgggagcaggg
gcgagggtcgacctggaagctggctcagaaattgaccagaaggtgatcaccattggtgga
gggaccacgacaacaatcatcacaaataaaacaacattggacacctcctacagtgactac
ggcaatggatatgactatggagtggacgactactacacaaatggtgccggaggaagcagc
agcagtgtttcacctggaggtggttccgtttctgtcggcggtgggtccgtttctgtcggc
ggtgggtccgtttctgtcggcggtgggtccgtctctgtcggcggtgggtccgcctctgtc
ggcggtgggtctgcctctgtcggcggtgggtctgcctctgtcagtggtggttccgtttca
gttggagggggttcagcatccgtgggtggatcttctacctccggcggcagctcagccagt
gccggcaccggagctggcgggtccattgcaactgagaccagccagggcataggaggagag
ggcgactacccagatgtcgataagttcaaagaagaggacatctctgagtacggcgatttg
gaaacttataactatgatgattaccccgacatcaaggacaaagtgctgcccgctgagacc
aacgagtactttgggcaggtcgacggagctcgtggtgagaaaggacagaagggagagcct
gctgttattgagcctggaatgctgttggagggtccgcctgggcctgagggaccaacaggt
cttcctggacccccaggtccatctggcccgccaggcagtaccggagatcctggtgaacgg
ggtcttccgggtcgagctggtcttcctggggctgatggtctgccaggaccccctggaact
gtcctgatgctgcctttcagattcagttctggaggcgactctggacataagggaccagct
gtatcggcacaggaggctcagatgcaggccatcatgcagcaggccaggctggccatgcgt
ggccccactggtccgatgggtttgactgggagaaccggccctctgggtccacctggtgtc
ccaggactgaagggagaatccggagaggccggacctcagggaccgcgtggacctatggga
tcttctggacccattggaaagccgggcagacggggtcgtcctggagccgacggtgccaga
ggaatgccaggacagactggacctaagggtgaccgagggttcgatggtctggctggactt
cctggtgaaaagggacacagaggagaacccggcccccacggacctcctggggctcctgga
gaagacggagagaggggcgatgatggagagatcggacccaggggacttcctggcgaaccg
ggaccccgagggttgctgggaccaaaaggacctcagggaccccctggaccaccaggtgtc
actgggatggatggccaccctggacccaaaggaaatataggacctcagggcgagccagga
cctcctggacagcaggggaacccaggagctcagggactcccagggccgcaaggagccatc
ggacctccaggagagaaggggccaactggaaagccaggcttgccaggaatgccgggagcc
gacggccctccgggccaccctggaaaagagggtccgtctggggagaaaggacacatgggc
cctgctggacctcaaggacccattggttatcctgggaaccgaggagtcaagggagccgat
ggcgtccgcgggcttaaaggaaacaagggcgaaaagggtgaagatggcttccctggcttc
aaaggagacatgggtatcaagggcgacaggggggaacttggaccagctggccccagagga
gaagatggtccagaggggccaaagggtcgctcagggctcccaggagacgctggtccactt
ggtcccaacggtgaaaagggtaaactcggagttcctggattaccaggatacccaggaaga
caaggaccaaagggatctcagggtttccaagggttccccggtgccaatggagagaaggga
tctcggggaacgggaggaaagccaggcccacgaggacagaggggaccgacggggcctcga
ggtgaaagaggaccaagaggaccgacgggaaaagccggcccaaagggtaactcaggaaac
gatggacctccaggacctcctggtgagaggggtttaccgggacctcagggaccaacaggt
tttccgggaccaaagggtccacctggacctgccgggaaagacgggctgcctggacatcct
ggacagagaggagagactggattccaaggcaagacaggtcctcctggtcctccaggtgtc
gttggacctcagggaccaactggtgaaactggacaaatgggagaccgaggccaccctgga
cccccaggtccacccggtgagcacggtctgcctggacctgccgggaaagaaggagccaag
ggggatcctggtcctgctggcccagcaggtaaagatggtcctcctgggcaaagaggtttt
cctggagatagaggtcttcctggtcctgtgggagctcatggcctgaaagggaacgagggt
cctcaaggcccacctggccctgctggttcccctggtgagaggggtcctgccggcccagct
ggacctacaggcctccctggacgtactggccctcagggacctccaggcactgctggagag
aaaggtggaccgggagagaaaggacctcaaggaccagctggaagagatggtattcaggga
cctgtgggtcttccagggcctggaggacctcctggacccccaggggaggatggagataag
ggggaaattggtgaaccgggccagaaaggaagtaaaggtgacaaaggagaacatggtcca
ccaggcccaactggccctcaaggccccgttggagcaccaggtcctgctggtgctgatggg
gagccgggtcctagaggtcaacagggtatgtttggacaaaagggagacgaagggtcaaga
ggcttcccaggacctccaggcccagtcgggctgcagggtttgcctggcccgcctggtgag
aaaggtgaaactggagatgttggtcagatgggtccacctggtcctcctggtcccagaggc
ccctctggacccccaggagccgacggccctcagggaccccctggtggtattggaaaccct
ggtgctgtgggagaaaagggagacgctggtgaaacaggagagccaggacttcagggggaa
gttggaccaccaggtccaagaggagagcgtggagagaaaggagaatctgggcctgctgga
gctgctggacctcctggtcccaaaggtccccctggagatgatggtcccaagggcagccca
ggtccaagtggatttcctggagaccctggtccacccggagagcccggtccagctggttta
gatggtcccgctggtgacaaaggggatgatggagaagctggtcagcctggatcacctgga
cccactggagaatccggtccatctggaccaccaggaaagagaggccctcctggagcacca
ggacctgagggaaggcaaggagagaaaggagccaagggggagcccggcatcgaaggtccc
caaggaaagacgggtcctgttggccctcaaggatcgcctggaaagcctggttctgaagga
cttaggggtattcctggttcagttggagagcaaggactgcctggtccgccaggcccagat
ggacctcctggacccatgggccctcctggtttaccgggtttgaaaggagactctggtgtg
aaaggagaaaagggccatcctggtctgattggtctgattggtccaccgggtgaacaggga
gagaagggtgacaggggtcttccaggtcctccagggtcatctggtccaaaaggagacaat
ggtatttcaggtcctacaggtccacttggtcccatcggccctcctgggttacctggtcct
cctggtccgaaaggagccaaagggtcatctggtcaaacgggaccaaaaggagagacaggt
tcacctggacttcctggtcctcctggccctcctggtgatgtcatccacccgctcccctta
gaagctcccatgaagggcaggacacgcaggaacatcgatgccagccagttggtcgacgac
gcccccgcggatgccagctacaaggactacgatgacggcatggaggaaatatttggctca
ctcaactcactcaagctggagatcgagcagatgaagcatccactgggcacgcagagcaac
cctgctcgtacctgcaaggacctgcagctctgccacccggatttccctgatggtgactac
tggatcgatccaaaccagggctgctcgcgcgactccttcaaggtttactgcaacttcaca
gcaggcggagagagctgcatctacccagataagaaatctgaaggggctaggctcacctcc
tgggtaaaggagaaccccggctcctggttcagtgaattcaaacgtggtaaactgctgtcc
tacgtggacgcagagggcaaccccatcggcgtggttcagatgacgttcctgcgactgctg
agcgcggcagcccgccagaacatgacgtacaactgctaccagtcagtggcgtggtacgac
caggagcaggacagctacgacaaggccatccgcttcctgggatccaacgatgaggagatg
tcttacgacaacaacccttacatccgctccctggttgacggctgcgcgttgaaaaagggc
tatgaaaagacagtgctcgagatcaacacaccaaaggtggaacaggtgccttttgtggac
atcatgttcaatgattttggcggctccacgcagaagttcggattcgacgtgggacccgtc
tgtttcatcggctaa
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