KEGG   Nothobranchius furzeri (turquoise killifish): 107374961
Entry
107374961         CDS       T05163                                 
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
nfu  Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:nfu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107374961 (prpf4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:nfu03041]
    107374961 (prpf4)
Spliceosome [BR:nfu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    107374961 (prpf4)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR3_1st Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_Gbeta Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st ANAPC4_WD40 PRP4 Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_Aladin WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_WDR41 Beta-prop_Vps41 WD_LRWD1 Beta-prop_IFT140_1st eIF2A Beta-prop_WDR19_1st WD40_like Beta-prop_WDR11_1st Beta-prop_WDR35_TULP_N Tricorn_2nd
Other DBs
NCBI-GeneID: 107374961
NCBI-ProteinID: XP_015798752
UniProt: A0A1A8AYG9
LinkDB
Position
sgr02:complement(72955773..73011212)
AA seq 506 aa
MSDDEGLAPTMKKARVFYGSLEEKERERLSSEMVAGSDALKAGIKAGNINISSGETLEME
ERVSERQQEVLAEFERRRRARQITVSTDDTEVKAGLRALGEPITLFGEGPADRRERLRSV
LSIVGPDALKKSRKDEERVKRSHDECHQTWYHEGPASLKEARLWLARYSLPRAMRRLEDA
RAQKDVPGATRTIRQQELHKTLRNLNNFCSQIGDDRPISFCHFSPDSKMLATASWSGLCK
LWSIPDCTLIRTLRGHSTNVGAIIFRPQAGVLLDKSEVSLASCAADGTVKLWNLESDEPV
ADIEGHSDRVSRVSWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHSTGVHDISFHPD
GSLAATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSLHFNPNGHHLATGSGDNTCKVWEL
RNRKCLYTVPAHQNLLSTVRFQPTDGHFLLTGSYDNTAKVWSHPGWMPLKTLAGHEGKVM
GIDVSPDGKLIATCSYDRTFKLWLSE
NT seq 1521 nt   +upstreamnt  +downstreamnt
atgtcggacgacgaagggctggctccaaccatgaagaaggctcgcgttttctatggcagc
ctggaggagaaggagcgggagcgcttgagctcagagatggtggcaggaagtgatgcgtta
aaggcgggcatcaaggcaggaaacatcaacatctcatcaggagagactctggagatggaa
gagcgggtcagtgagcggcagcaggaggtgcttgcagagtttgagcggcgcagacgagca
cggcagatcactgtgtccaccgatgacaccgaagttaaggccggcctccgagcactaggc
gagccaattacattgtttggagagggaccagctgaccgtcgcgagagactgcgcagtgtt
ctgtccattgttggacctgatgcgctaaaaaagtccaggaaggatgaagagagagtcaaa
aggtcacatgatgagtgccaccagacatggtaccatgaaggccctgcctccctgaaggaa
gctcgactctggttggcaagatactctctgccacgggcgatgagacgtctggaagatgca
cgtgcacagaaggacgttcctggggcaaccaggacaattcgtcaacaggaattgcacaag
accctgaggaatctgaacaacttttgcagtcagatcggggacgatcgaccaatcagcttt
tgccatttcagcccagattccaagatgctggccacagcatcctggagcggtctatgtaag
ctgtggtccatacccgactgcactttgatccgtacactcagaggacacagcacaaatgtg
ggtgccatcattttccggccacaggctggtgtgcttctggataaatccgaggtgagtttg
gcttcgtgtgctgctgatgggacagtaaagctgtggaacctggagagcgacgagccggtg
gcagacattgagggccacagtgaccgagtgtcacgagtttcctggcatccttctggaaga
ttcctgggaacaacttgttatgacaactcatggcgtctgtgggacctcgaggttcaagag
gagatccttcatcaagagggtcacagtacaggtgttcatgacatcagcttccatcctgat
ggctcgttggccgctacaggaggactggatgcttttggcagagtgtgggacttacgaaca
gggcgctgtgttgttttcctggagggacacctcaaggagatctacagcctccacttcaac
ccaaatggtcatcatctggccacaggaagtggtgataatacctgtaaggtttgggagctg
cgtaacagaaaatgtttgtacacagtacctgctcaccagaatctgctgtcaaccgtgcgg
ttccaacccaccgatggtcacttcctgttgacgggatcatatgacaacacagcaaaagtg
tggagtcacccaggctggatgcccctgaagacacttgctggacatgagggaaaggtgatg
ggcattgacgtgtcgcctgatggtaaactgattgcaacctgctcctatgatcgaaccttt
aaactctggctgtcagagtga

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