Nothobranchius furzeri (turquoise killifish): 107375117
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Entry
107375117 CDS
T05163
Name
(RefSeq) collagen alpha-1(V) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107375117
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107375117
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107375117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
107375117
NCBI-ProteinID:
XP_015798966
UniProt:
A0A8C6KSG5
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Position
sgr02:78494158..78583214
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AA seq
804 aa
AA seq
DB search
MFLWRWTFCLLGFLPRSVASPDADFGGESGSGMLQEPEEVNVLQELSFQVSGSSNSSMKV
EDSRCPFIQVGQYSTLSLPLRRLFADSVADEFSLLLQLRSSQRQEHGVLTLLGPDRRITL
QLRISAHAVVFIGTQQRHYEFPVSGVCDGGWHHLAFSVSANRLALYVDCSLLESVGWVNH
GMEISADGLLMVGGLSEAFETPFEGDLGQLVFLLGDPDGAQKHCSHHPPRCRESAPKPPR
SLRSDSALENMLLSSNDLEDLQNRSDEERVLSFDLANAFQRGGSSRGDGTIPSRPKGSAG
RGDVFVVDEDTDLLDPVLLQGGYVNPQWKPSMHGSKGSQKGKPEVPSKKVEENITTEKKV
DSRTPSLSPKNPTDDIIDLVRESAPKKPSLGHPLPPKTSSSPRTSTDSEKPREELDVETR
TVSPAPRWIPTTTTTHLDHRTTPNKHTRPDREGPLIVPAGSRDGNLVLGSDGRTYRVQRG
PAGRKGPPGPDGCAGDPGYPGFKGDKGEMGYEGRRGQRGQPGLPGNPGLPSFYLWENTAE
EWTAFRQTNFYQLLSAGWPTKEGPVGPPGEMGKPGVQGPPGDPGIHGQPGMPGDMGDPGS
RGPPGRTGTPGRDGDDGEDGQPGPPGSPGPHGLWGYRGERGPKGEKGDEGLVGFRGPTGE
TGEPGEKGETGLPGAAGPVGQPGSQGARGGSGPEGSIGPDGECGLDGPSGPPGLPGAPGV
TGHVGAKGVDGSRGDSGPAGSVGPQGPQGPPGLEGQMGPPGHRGPQGQAGMTGAAGPKGE
PGPVGPVGPRGDPGFEGPMVSYFN
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgttcctctggaggtggaccttctgcctcctcgggtttttacccagaagcgtcgcatca
cctgacgcagacttcggaggcgagtctggttccgggatgctgcaagaaccagaggaggtg
aatgttctgcaggagctgtctttccaggtgtccggcagcagcaactcatccatgaaggtg
gaggacagcaggtgtcccttcatccaggtgggacagtactccaccttgtccctccctctg
cggcggctcttcgctgacagcgttgcagatgagttcagtttgctgctgcagctccggagt
tctcagaggcaggaacacggcgtgttgacgctgctcggcccggacagacgcatcacactg
cagcttcgcatcagcgcccacgccgtcgtcttcatcggaacgcagcagcggcactacgag
tttccggtcagcggagtgtgtgacggaggatggcaccacctggccttcagcgtgtcggct
aatcgcctggcgctctacgtggactgctccctgctggagagcgtgggttgggtgaaccac
gggatggagatcagtgccgatgggctgctcatggttggaggcctcagcgaggcgtttgaa
actccatttgaaggtgaccttggacagctggtcttcctgctgggcgaccccgacggcgct
cagaagcactgcagccaccatccgccccgctgcagggagtccgctcccaaacctccccgc
tcgctgcgcagcgacagcgccctggagaacatgctgctgtcctcgaatgacctggaggac
ctgcagaaccgctctgatgaggagagggttttgagctttgacctggcgaatgctttccag
cgaggagggagttctcgaggggatgggacgataccttccaggcccaaaggttcagcaggt
cgtggagacgtcttcgtggtcgatgaggacaccgacctgttggatcctgtgctcctgcag
ggtggatatgtgaaccctcagtggaaaccttccatgcatggatctaagggaagccagaag
ggcaaaccagaggttccatctaaaaaggtggaggagaacatcacaacagagaaaaaggta
gattctaggactccatcgctctcccccaaaaacccgacagatgatattattgacttggtc
agagagagtgctcctaagaagccctcactgggacatcccctgcctccaaagacctcttcg
agtccaagaacatccacagactctgagaaaccaagagaagaactggacgtagagaccagg
acggtctcacctgcacctcgttggattcccaccaccaccaccacacacttggatcacagg
accacaccgaacaaacacacaagaccagacagagaaggccctctgattgtgcctgctgga
tccagagatgggaacctggttttaggatcagatggcagaacgtacagggtccagagaggt
ccagctggcagaaagggccccccaggaccagacggatgtgctggtgatccggggtaccct
gggtttaaaggggataagggtgagatgggctatgaaggaagacgaggacagcggggacag
ccaggacttccaggaaatcctggtttaccatcgttttacttgtgggaaaacaccgcagag
gaatggacggctttccggcaaactaatttctaccagctcctctctgctggatggcctact
aaagaaggacctgtaggaccacctggagagatgggcaaacctggcgtgcagggcccacct
ggagatccggggattcacggacaaccaggaatgccaggagacatgggggatccaggctcc
aggggccccccaggacggactggtaccccagggagagatggtgatgatggggaagatggt
cagccgggaccacctggttctcctggaccacatggcctatgggggtaccgaggagagcga
gggccgaaaggggagaaaggtgatgagggtctcgttggcttccggggtccaacaggagaa
actggcgaacccggtgagaagggtgaaactggtttaccgggtgcagctggtcctgttgga
cagccagggtcccagggagctcgaggtggttctggaccagaaggatctatcgggcctgat
ggggaatgtggtctggatggcccctccggtcctccagggctgccgggtgctccaggtgtg
actgggcatgttggtgctaagggagtggatggctcaaggggggactcggggccagctggc
agtgttggtcctcagggccctcagggacctccaggtttagagggacagatgggacctcct
ggacatagagggccccaggggcaggctggtatgacgggtgctgctggacctaaaggagag
cctggacctgtggggcccgtgggccctcggggggatcccggctttgagggtcccatggtg
agttattttaattaa
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