Nothobranchius furzeri (turquoise killifish): 107375118
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Entry
107375118 CDS
T05163
Name
(RefSeq) collagen alpha-2(XI) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107375118
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107375118
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107375118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
107375118
NCBI-ProteinID:
XP_015798967
UniProt:
A0A8C6KW86
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Position
sgr02:78588425..78633392
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AA seq
920 aa
AA seq
DB search
MDARGNLEPEGTRVQQGRGVTLGYQAHRVYLGLLDLREQKESLGPSGADGSAGAKGSTGF
HGIAGERGADGPPGSTGPSGKTGPQGSPGPPGNKGFTGKPGTEGPQGPVGMYGIPGNAGA
RGPAGLQGERGESGLRGLPGSPAKPGPKGPPGSSGEKGPRGPQGWLGAVGPKGIHGPQGP
AGPPGPNGGPGKPGPRGVIGPPGPPGPQGSAGIPGSPGDDGLSGAAGGKGQKGLPGPPGD
TGPPGSDGPQGLSGPRGTEGPAGRKGDLGVLGPSGKSGVQGPKGERGLEGTKGPLGLRGP
VGKEGEVGRPGELGGPGPKGEKGDVGPPGLSGPEGVWGAIGGNGIQGPKGGKGHNGLLGE
PGLVGKEGPAGLPGLQGIEGPRGPPGPDGPGGTKGDSGPMGIAGPPGSEGFQGEDGPRGV
RGDPGRPGLPGKVGQVGPKGEEGAEGEPGTQGPKGEPGVPGPAGKQGEDGLPGVQGPSGL
PGLEGPVGEPGQQGPPGPVGSLGVRGNPGAEGKQGGKGEKGDDGEDGPPGASGATGRRGK
RGKAGVRGLRGDRGPKGEKGADGPEGLLGWSGIIGPPGLRGDLGDGGGKGEQGEKGDMGL
PGPAGQDGPKGMPGEVGFPGPAGQKGEQGNIGPPGPRGALGMPGLPGLFGIKGHKGYQGL
PGLPGRRGLPGPPGLPGPPGLSLNFTLTQLKDLMYMSDKPNLALVQSLLESLQQELRLLL
DPPDGSKEHPATTCLELWLCHPEYRSGMYYIDPNQGSTADALLAYCVFTSSSKQTCLHPR
DYQLPMKSWLEEPSEEGKFQWLSRLDQGHQFSYPDASVVQMRFLRLHSVTAVQTVTYSCH
PGHRLGLEEREVKFLTDTGKQSYLGALKDCLPGEETPSGPRESVFEFEDLQLLPLRDVAI
MGGGNFTHQFSFTFGPVCFS
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggacgctcggggaaacctggagccagagggaacaagggtccaacagggcagaggggtc
accctgggttaccaggcccatcgggtttacctgggcctcctggacctaagggagcagaag
gaaagcctgggtccgtcaggtgcggatggcagcgctggcgctaagggatcgacgggcttt
catggtatcgctggagagagaggagcagatggcccaccaggttcaacgggaccctccggg
aagacgggaccccaagggtcacctggacccccaggaaacaagggttttacaggaaagcca
ggcacggagggtcctcagggcccagtaggcatgtatggtattccaggaaatgcaggcgca
cgtggacctgcaggtttacagggagaaaggggcgagtctggtttaagaggtttaccgggt
tctcctgccaagccagggcctaaaggtcctccaggttcttctggagaaaagggaccccga
ggacctcagggttggctaggagctgtaggacctaaagggatccacggcccacagggccct
gctggtcctcctggtccaaatggtggtccgggtaaaccaggacccagaggagtcatcggg
cctccaggacctccgggtccacaggggtcggcaggaatcccaggctcaccaggtgatgac
gggttatcaggagcagcgggaggaaaaggacagaagggcttacctggaccaccaggagac
acaggtccaccaggatcagatggaccgcagggtctttctggcccacgagggaccgagggt
ccagctggaaggaaaggagatctgggagtcttggggccttctgggaaatctggagttcag
ggacccaagggagagagaggactggagggcaccaaaggcccactgggactacgtggacca
gtcggaaaagagggggaagtcgggcgtcctggtgaacttggtggtcctggacccaaagga
gagaagggggatgtcggacctcctggtctgtctggtccagaaggcgtgtggggagccatt
ggaggaaacggcatccagggtcccaaagggggaaagggccacaatgggttgttgggtgaa
cctggactagtgggtaaagagggtccagcgggcctgccggggctccagggaatcgaaggt
cctcgaggacctccagggcctgatgggcctggaggaacaaagggggattctggcccgatg
ggtatcgctggaccaccagggtcagagggctttcagggagaagatggaccacgtggtgtg
agaggggatcctggcagaccaggacttcctggtaaagtggggcaagttggaccaaaggga
gaagagggagctgaaggagaacccggaacacagggaccaaaaggagagccaggagttcca
ggcccagcaggaaaacagggtgaggatggacttccaggtgtccagggtccttctggtctg
ccgggacttgagggacctgttggagaaccgggacagcagggtcctccaggtcctgtcggg
tctcttggagttcgtggaaacccaggggccgaaggaaaacagggcggaaagggagaaaag
ggagacgatggtgaagatggaccaccaggtgcttctggtgctactggaaggaggggaaag
cggggaaaggctggagtcagagggctgaggggagacagaggaccaaagggagaaaaggga
gcagatgggccagaaggcctccttggatggtcagggatcattggacctcctggactacgt
ggagatctgggtgatggaggtggaaagggagagcagggggagaaaggagacatgggactg
cccggaccagctggacaggatggcccaaaggggatgcctggtgaagttggattccccggt
ccagcaggacaaaagggagaacagggaaacatcggcccccctggaccaagaggtgcatta
gggatgcccggactgcctggtttgtttggaataaaggggcataaaggctaccaaggcctt
cctggactgcctggaagacgagggcttccgggtccacctggtcttcctggtcctccggga
ctctctctgaacttcactttgactcagctaaaggacctgatgtacatgtccgacaagccc
aacctcgctctggtccagtcgctgctggagtctctgcagcaggagctccggctgctgttg
gatcctcccgatggaagcaaggagcatccggccaccacctgcctggagctctggctctgc
caccctgaatatagaagcggaatgtattacatcgacccgaaccagggcagcaccgccgac
gctctgctggcctactgcgtcttcacctcctcatcgaagcagacctgccttcatcctcgg
gactaccagctgcctatgaaatcttggctggaagaaccctctgaagaaggaaagtttcag
tggctcagcaggttggatcaaggacatcagttttcttatccagatgccagtgtggtccag
atgcggttcctgaggttacacagtgtcaccgctgtccagacggtgacatattcctgtcat
ccaggacatcgactgggcctggaggagagagaggtgaaattcctcaccgataccgggaag
caaagctacctgggagcgctgaaagattgcctgcccggagaggagacgccctctggtcct
cgggagtctgtgtttgagtttgaagacctccagctacttcctctgagagacgttgcgata
atgggaggaggaaacttcacacaccagttcagcttcacctttggaccagtgtgtttcagc
tag
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