KEGG   Nothobranchius furzeri (turquoise killifish): 107375249
Entry
107375249         CDS       T05163                                 
Symbol
smu1
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
nfu  Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:nfu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:nfu03041]
    107375249 (smu1)
Spliceosome [BR:nfu03041]
 Complex B
  Other components
   Complex B specific factors
    107375249 (smu1)
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 WDR55 WD40_CDC20-Fz WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd EIF3I Beta-prop_EML Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st NBCH_WD40 WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_RIG_2nd LisH_TPL Beta-prop_HPS5 Beta-prop_NWD2_C Beta-prop_NUP159_NUP214 Beta-prop_Nup120_160 Beta-prop_Vps41 Beta-prop_DCAF4 Ge1_WD40 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_IFT140_1st Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_WDR35_TULP_N Beta-prop_IP5PC_F Beta-prop_VPS8 VPS8_N DUF7165 RMC1_N PD40 TFIIIC_delta LisH WD40_like Beta-prop_RSE1_1st
Other DBs
NCBI-GeneID: 107375249
NCBI-ProteinID: XP_015799155
UniProt: A0A1A8U2S7
LinkDB
Position
sgr02:complement(85806224..85819178)
AA seq 512 aa
MAVELEPADVLRLIMQYLKENNLYRTLTTLQEETTVTLHTVESIESFIEDINRGHWDSVL
LAIESLKLPDNTLIDLYEQVVMELIEMREVGAARSLLKRTDPMIMLKQTQLQRYTHLENL
LTNSNFDPREAYPKGSSKEKRRRAIAEALVREVSVVPPSRLIGLLGQVNYVNRQQNPGFQ
SSVTTVDTSGKKEQPAVVTETFPTQLYRHIKFGRRSHVECARFSPDGKYLITGAVDGFIE
VWNFNTGKISKDLKYQAHDSFMMMDDAVLCLCLSHDSDLLATGAQNGKIKVWKIQSGLCV
RRFEHAHNRGVTCLSFSKDGNQILSASFDQTIRIHELKSGKTLKVLNGHSSFVNDASFTR
DGFYIISASSDGTVKIWNMKSCQCIHTFGCPSLTSDVTINNVMALPQNPEHFVVCNHSNT
LVIMSLHGQTVKTLSSDSAEGAGFVCCTLSPRGEWIYCVGEDSVLYCFSYTTGQLEKTLT
VHEKGVIGIAHHPHENLIATYSEDGLLRLWKP
NT seq 1539 nt   +upstreamnt  +downstreamnt
atggctgtggagctggaacccgcggacgtgctccgcctgataatgcagtacctgaaggag
aacaacctctaccgcacgctgaccaccttacaggaggaaaccactgtcacactccacaca
gtagagagcatcgaaagtttcatcgaggacataaacagaggccactgggactctgttctg
ctcgccatcgagtccctgaagttacccgataacacgctaatcgacctctatgagcaggtt
gtgatggagctgatagaaatgcgggaggtgggcgctgctcgttctctcctcaaacgaact
gacccaatgattatgctgaagcagacccagctgcagaggtacacccacttggagaatttg
ctcaccaactcaaactttgaccctcgagaggcgtacccaaaagggagcagcaaggagaaa
cggcgcagagctatagccgaggctttggtgagggaggtcagcgtggttccaccctcacgc
ctcattggactcctgggacaagtcaattacgtgaaccgacagcagaatccaggttttcag
tcctctgtgacaactgtcgacacatctggcaaaaaggagcaacctgctgtggtgacagag
accttcccaacacagctgtaccgccacataaagtttggacggaggtcacatgtggaatgt
gctcgtttctcacctgatgggaagtatctgatcactggagcagtggatggcttcatcgag
gtctggaatttcaacactgggaaaattagcaaggatctgaagtaccaggcccatgacagc
ttcatgatgatggatgatgctgtgctctgcttgtgcttgagtcacgattcagatttgctc
gcaacaggggcgcagaatggcaaaataaaggtgtggaagatccaaagcggcttgtgcgtg
cgcaggtttgagcacgctcacaacagaggcgtgacctgtctgagcttttccaaggatggg
aaccagatcctcagtgcttcctttgaccaaaccatcagaatccacgaattgaagtcaggg
aagacactgaaggtgttaaatggccattcatcatttgtaaatgatgcttcgttcactcga
gatggtttctacatcatcagcgcctcttctgatggaactgttaagatctggaacatgaaa
tcttgtcaatgcattcacactttcggatgcccgtcgctgacatcagacgtcacgatcaac
aacgtgatggctcttcctcaaaatccagagcactttgtggtttgtaaccactccaacacg
ctggtcatcatgagcctgcacggccagactgtgaagactttgagttccgattcagcagaa
ggagccggttttgtgtgctgcaccctgtcgccccgcggggagtggatctactgtgtggga
gaggactctgtgttatactgcttcagctacacaacaggacagctggagaaaacgctgact
gttcacgagaaaggcgtgattggcatcgctcaccacccacatgagaacctgattgccacg
tacagcgaggacggcctgttgagactttggaaaccgtag

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