Nothobranchius furzeri (turquoise killifish): 107375271
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Entry
107375271 CDS
T05163
Name
(RefSeq) collagen alpha-1(XXIII) chain-like isoform X1
KO
K24355
collagen type XXIII alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107375271
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107375271
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
107375271
NCBI-ProteinID:
XP_015799195
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Position
sgr01:23150892..23343797
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AA seq
624 aa
AA seq
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MMDASSEAFGEKKPACECATKPMVQRWLPGFPIALCLLMSLSSITVCLLMCFKTHDLESR
LQMEIMDKVSLHPAHRFFQNEDGTLISELRTPIGKLVEERVVALMPKLRTARDVQECSCP
PGPPGKRGRIGRRGEPGPPGKSGRDGYPGPLGLDGKPGLPGVKGSQGLPGPKGEKGDQGD
IGPRMIYPRYDHGFLSGEQSSSFQRRFLKGDQGQAGPAGPPGPPGQPGARGPPGNTGKDG
PRGPAGEPGLPGRDGAEGPQGPPGKLGEDGEPGYPGLQGPPGSKGEPGVGEKGERGMDGL
PGFKGDKGEMGEQGPQGPMGHPGEKGAAGSSDIVDFNGKLLDAFQAINTISVSGPPGPPG
PPGHSGEKGELGLPGPAGVDGQKGQKGDVGDSGPPGERGEKGEMGLSGPSGMDGQKGDKG
DCRLDDNLIQMISQPGPPGPPGPPGVPGSPGSMGLHGMPGPKGEPGVGVKGEQGEAGAPG
YNGQDGHQGPPGSPGLVGLPGAKGEKGRPGEPGLDGFPGLMGDKGDRGDKGEKGDRGSVG
KRGLKGQKGEQGPPGLDQPCPVGCDETKGLSVKAGLSPPETPPLPPSGPEAPCPVGHDGL
PIPGCWHKEEMARQKLKRKRLSQP
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgatggacgcgtccagcgaggcttttggggagaagaagccggcgtgtgagtgtgccacc
aagcccatggtccagcggtggctgccggggttccccattgccctctgcctgctcatgtcg
ctgagctccatcaccgtttgtcttctgatgtgcttcaagacccacgacctggagagccga
ctgcagatggagatcatggacaaagtctcgctccatcccgcgcacaggttcttccaaaac
gaggatgggaccctcatttcagaactacgcaccccgataggaaagctagtggaagagaga
gtggtggctctaatgccgaagttacgcacggccagagatgtccaagagtgctcctgtcct
ccaggacctccagggaaacgtgggcgaataggaagaagaggagaacctgggcctcctggc
aaatctggacgagatggatacccgggccctcttggcttggacggcaaaccgggtttacca
ggtgtcaaaggaagccaggggctgcccggacccaagggagagaagggggaccaaggagac
attgggccaaggatgatttacccgcggtatgaccacggctttctctctggggagcagtcc
agcagcttccagagacgctttctgaagggtgatcagggccaagccggacccgctggtcct
cctggtcctcccggtcaacctggtgcccgcggcccccctggaaacactggcaaggatggg
cctcgtggtcctgctggtgagccgggtttgccaggtcgtgatggagctgagggaccacag
gggccgcctgggaagctgggagaggacggtgagccaggctatccaggacttcagggtcct
ccagggtcaaagggagagccaggtgtgggagagaaaggagagagaggcatggacgggctc
ccaggatttaagggtgataaaggagaaatgggagaacaaggaccacaaggacccatgggt
catcctggtgaaaagggcgctgcaggctcctcagacattgtggacttcaacggcaaactc
ctggatgctttccaggccatcaacaccatcagcgtttcgggcccaccgggaccaccggga
cctcctggacattcaggagaaaaaggcgagctcggtttacctggaccagcaggagtcgac
ggacaaaaaggacaaaagggcgacgtgggtgactctggccctcctggtgaaagaggggag
aaaggagaaatgggtctatccgggccgtctggtatggatggacagaaaggggacaagggt
gactgcaggctggatgacaacctgattcagatgatttctcagccgggtcctccaggccct
cctggccctccaggagtccctgggtctccaggatccatgggtctacatgggatgcctggc
cctaagggtgaacctggagttggggtcaagggggagcagggtgaagccggagctcctgga
tacaatggacaggacggccaccagggtccacctgggtctcctgggttggtgggtcttccc
ggtgcaaaaggagaaaaaggcagaccgggagagccaggactagatggttttccaggtctg
atgggggacaaaggtgaccgaggggacaaaggagaaaagggtgaccgggggtcagtggga
aagagaggactgaagggacagaagggagaacaaggtcctccaggactggaccagccgtgt
cctgtgggctgtgatgagactaagggtctgtctgtgaaggcggggctttctccacctgaa
actcctcctcttcctccttctggccccgaggccccctgtcctgtgggacacgatgggcta
ccaataccaggctgctggcataaggaggaaatggcgaggcagaagctcaaacgcaagcgt
ctctctcagccttga
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