Nothobranchius furzeri (turquoise killifish): 107375336
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Entry
107375336 CDS
T05163
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107375336 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107375336 (exosc1)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
107375336 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
107375336 (exosc1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
107375336
NCBI-ProteinID:
XP_015799286
UniProt:
A0A1A8AFJ2
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Position
sgr02:complement(88220634..88227181)
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AA seq
204 aa
AA seq
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MSSQATLVENMSPMKLCVPGDKLCSEGDCNPGAGVYLRHGYIYSSLAGFVLKTTEGEKLP
VISVVRETEAQLLPDVGAIVTCKVTSTNPRFAKVHILYVGSTPLKDRFRGTIRKEDVRAT
EKDKVEIYKSFRTGDIVLAKVISLGDIQSNYLLTTAENELGVVVAHSEAGAQMIPISWCE
MQCPLTHAKEFRKVARVQPEYLEA
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgcaagctactcttgtcgaaaacatgtcgcccatgaagttgtgtgttccaggt
gacaagctttgcagtgagggagactgtaatccaggcgcaggagtatatctgcggcatggc
tacatttactcctcactcgcaggctttgtgctcaagacaaccgaaggcgagaagttacca
gtgatctcagtggtgagagaaacagaagctcaactacttccagatgtaggagccattgtc
acctgtaaggtgaccagcaccaaccccaggtttgccaaagtccacatcctgtatgtgggt
tccacaccgctgaaggaccgcttcagagggaccatcaggaaagaagacgtgcgagcaaca
gagaaggataaagtggagatatacaaaagcttcagaacgggcgacattgttttggctaaa
gtgatttctctcggtgacattcagtctaactacttgttaacaacagctgagaatgaactg
ggtgtggtggtggcccacagcgaggcaggagcccagatgattcccatcagctggtgcgag
atgcagtgtccgttgactcacgccaaagagtttcgtaaagtggctcgagtccagcctgag
tatttggaagcgtga
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