Nothobranchius furzeri (turquoise killifish): 107375752
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Entry
107375752 CDS
T05163
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
107375752 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfu03400
]
107375752 (msh6)
DNA repair and recombination proteins [BR:
nfu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
107375752 (msh6)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
107375752
NCBI-ProteinID:
XP_015799961
UniProt:
A0A1A8AD88
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Position
sgr03:complement(20472968..20484433)
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AA seq
1380 aa
AA seq
DB search
MAKQSSLFKFFTKSPPSVTKPKPSPSPVEADLPSSVERSNSSPKEEAKQTQQQDSTKTRK
VKQKTSSRTASNGFKNLFGDSKAPDAKDSSSTCPFTAGALVWAKLEGHPWWPCMVVPQPQ
TGQQMRGRGQDQRIHVHFIDEPPTRGWIRTKYIREYQGSDSSDVKPGGVFFSGKPVIRRA
MELADKIIFESPEKRLKMPLCMDPSDEEGDDEEMELDQSTQTDEEVSDVEETKKEEEKPK
VSRRSSRASTDKGSKAKRRRIIVASDSDKSDEEFKPEHAASCSEDEEEEGTMSGEEEQKA
NSQESEEDSPVKPLKRKRSAGKSVSAKEKKPAVVVSTPKRPPAAVTANTKSRLSSFSAPD
SFESQMSEPGSTGGVTVWDHEKLEWLHDGKRKDRKRRRQTDDDYDSSTLYVPEDFLNKNT
PGMRRWWQLKSGMFDTVIFYKVGKFYELYHMDAVIGVNELGLTFMKGNWAHSGFPEIGFA
RFSDVLVQKGYKVARVEQTETPEMMEARCKSIAKPTKFDRVVKREVCRIITRGTQTYSVL
DGAPSESQSKFLLSLKEKAEEECSGRCRVYGVCFVDTSVGYFHIGQFSDDRHCSRLRTLI
AHYSPAEVLFERGNLSVETRKILKASLSSALQEGLNAGTQFWDAQKTLKTLSEENYFEEI
AGQERATGTNFLPTLLKLMTSESDSLCLTPKEGYELALSAFGACIFYLKKCLVDKELLSM
ANFEEYVPVDVEMEKASGPASFFAQTRQRMVLDGVTLANLEIFQNGSGGTEGTLLERLDT
CSTPFGKRLLKQWLCAPLCNPTSIRDRLDAVEDLIGAQAQATEVSDLLKKLPDLERLLSK
IHSIGTPLKGQDHPDSRAVLYEEVTYSKRKIADFLSALEGFKTMQEIISILTSVLGEFRS
KLLRQVVSLKTEKDGLFPDLSAELKRWETAFNHEKARSTGVITPKSGFDPEYDQALTGIK
SCERELQEYLDRQKKRIGCKTMVYWGTGRNRFQMEVPDSVSERNIPEEYDVRSTKKGYKR
YVTKESERLFSELQGLEEKRDAAVKDCMRRLFYNFDKNYRDWKTGVECMAVLDVLLALSR
YSQGGDGAMSRPQVLLPEDEQATPFINLTGSRHPCVTKTFFGDDFIPNDIFIGCPGISEN
DEVEGCASCVLVTGPNMGGKSTLMRQCGLVIILAQLGCYVPAESLRFTPVDRVFTRLGAS
DRIMAGESTFFVELSETASILHHATKHSLVLLDELGRGTATYDGTAIASAVVKELAEKIC
CRTLFSTHYHSLVEDYANNPAVRLGHMACMVENECEDPSQETITFLYKFISGACPKSYGF
NAARLANLPEEVIQSGHRKAREFEKNTISLRLFKKLCQFADDPALDTKHFTPLVHLLNTM
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagctcacttttcaagttttttaccaagtctccgccatctgttaccaag
ccgaagccgagcccttctcctgtcgaggcagacctgccttcctccgtggagaggtccaac
tcgtctcctaaagaggaagctaagcagacacagcagcaggactccaccaaaaccagaaaa
gtcaaacagaaaacaagctccaggaccgcgagcaatggatttaaaaatctgtttggcgac
agtaaggccccggatgctaaagacagcagctcaacctgtccattcactgctggtgccctt
gtctgggccaaactagaaggacacccttggtggccgtgcatggttgttccccaacctcag
acaggccagcagatgaggggccgtggtcaggatcagcgcatacatgttcatttcattgat
gagcctcccaccagaggatggatcagaaccaaatatatcagagagtaccaaggctccgac
agcagtgatgttaagcctggaggggtgtttttcagtggcaagcctgtaattcgccgtgca
atggagcttgctgataaaattatttttgagagtcctgagaaaagattaaaaatgcctctc
tgcatggatccatctgatgaagaaggggatgatgaagaaatggagctcgaccagtcaaca
cagaccgatgaagaggtcagcgacgtagaagaaacgaaaaaggaagaagaaaagccaaaa
gtcagtcgacgctcatctcgtgcttcaacagataaaggaagcaaagccaagcggcgtcgc
atcattgtggcctccgacagcgacaagtcggatgaggagttcaaacctgaacatgccgca
tcgtgcagcgaggatgaagaagaagaggggaccatgagtggtgaagaagagcagaaagcg
aacagccaggagtctgaagaagacagtcccgtcaaacctctaaaaagaaaacgttctgca
gggaagtctgtcagtgccaaagaaaagaagcctgcagttgtggtttccactcctaaaagg
cccccagcagcagtgacggccaacacaaagtcccgtttgtcgtctttctccgctcccgac
agctttgagagccagatgagtgaacccgggtccactggaggtgtcacagtttgggatcat
gagaagctagagtggttgcatgatggcaaaaggaaagaccgtaaaaggcggcggcagaca
gacgatgactatgattcttctactctgtatgtgcctgaagactttcttaacaaaaacaca
cctggaatgcgtcggtggtggcagctcaaatccggcatgtttgatacggtgattttctac
aaagtggggaagttttatgagctttaccacatggacgccgtgattggggtcaacgagctg
ggcctgaccttcatgaaaggaaactgggcacactctggctttccagagattggctttgca
cgtttttctgacgtgttggtccagaaaggctacaaggtggctcgcgtggagcagacagaa
accccagagatgatggaggcacgctgcaaatccattgccaaacccacaaaatttgaccgt
gtggtgaagagagaagtgtgccgcattatcacacgcgggacccagacctacagcgtgttg
gacggtgctccttcagaaagtcaaagcaagttcctcctgagtttgaaagaaaaggctgaa
gaggaatgttctggccggtgccgcgtctacggcgtctgttttgtggacacatctgtggga
tacttccatatcggtcagttctccgacgatcgtcactgctcacgtctgcgcaccctgatt
gcacactactcccctgctgaggtgctctttgaaaggggcaacctctctgttgaaacgcgc
aaaatactcaaggcatctctgtcctcggctttgcaagaaggactcaatgcaggaacccag
ttctgggatgctcagaaaactctgaaaaccctctcagaagagaactattttgaagagatc
gctggacaagagcgggccactgggaccaattttctccccactctcctaaagctcatgacg
tctgaaagtgattctctgtgcttaactcctaaagagggctatgaactggcgctgtcggct
tttggcgcttgcatattctaccttaagaagtgcttggtcgataaagagctgctttctatg
gccaactttgaagaatatgtccctgttgatgtagaaatggagaaagcttctggacctgcc
agtttttttgctcagactcgtcagcgtatggttctcgatggcgtgactctggcaaacttg
gagatctttcagaacgggtccggaggaacagaggggacactgttggagcgtctggacaca
tgctctacaccgttcggcaagaggctcctaaagcagtggctctgtgcgcccctgtgtaac
cccacatccatcagggacagactggatgccgtggaggacctgataggagctcaagctcaa
gcaactgaagtctcagacctgcttaagaagcttccagatcttgagcgtctactgagtaaa
atccacagcatcggtactcctctgaagggccaggaccaccctgacagcagagcagttctc
tatgaggaagtcacttacagcaaacgcaaaattgcagacttcctctcagctttggagggt
ttcaaaaccatgcaggagattatttccatcctaacctcagttttgggagaatttcgttct
aagttgcttcgtcaagttgtcagcctgaagaccgaaaaagacggcctctttcctgacctc
tccgcagaactcaagcgctgggagaccgctttcaaccacgagaaggctcgcagtaccggt
gtcataacccctaaatctggatttgaccccgagtatgaccaggccctcactggaatcaaa
agctgcgagcgagagctgcaggagtacctggacagacagaagaagagaattggctgtaag
accatggtctactggggaactgggcgaaatcgctttcagatggaagttcctgacagcgtt
tctgagaggaacatcccagaggaatatgatgtcagatccacaaagaaaggctataagcgt
tacgtgacaaaggagagtgagcggctgttctcagagctgcaagggttggaagagaagaga
gacgctgcagtgaaagactgcatgaggaggctcttctacaactttgacaagaactacaga
gactggaagacgggtgtggagtgcatggcagtgctcgatgtgctgctagctttgtcacgc
tacagtcagggcggagacggtgcgatgtccaggccgcaggtgctgcttccagaggacgag
caggccacgcccttcattaaccttaccggatcccgtcacccctgcgtcacaaagaccttt
tttggcgacgacttcattcccaatgacatcttcataggctgtcctgggatcagtgaaaat
gatgaggtggaaggttgtgcctcgtgtgttctagtcacaggcccaaacatgggtgggaag
tcaaccctcatgcgacagtgtggacttgtgattatattggctcagctgggctgctatgtc
ccagctgagagccttcgcttcacaccggttgaccgggttttcactcggctgggcgcctcg
gatcggatcatggcaggagagagcaccttcttcgtggagttgagcgagactgccagcatc
ttgcaccacgccaccaagcactcacttgtgctccttgatgaattaggaaggggcacggcc
acatacgacggcaccgcgatagccagcgccgttgtgaaggagctcgctgagaagatctgc
tgccgcacacttttctctacgcattaccactccctggtggaggattacgccaacaatccc
gctgtgcgcttaggccacatggcctgcatggtggagaatgagtgtgaggacccgagtcag
gagacgatcacgttcctctacaagttcatcagcggcgcttgtcctaagagctacggattc
aatgcagctcggctcgcaaacctgccagaggaggtcatccaatccggacacaggaaagct
agagagtttgagaaaaacacaatcagcctcagactgttcaagaagctctgtcagtttgcc
gacgaccctgctctggacaccaaacacttcactccacttgttcacctgctcaacaccatg
taa
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