Nothobranchius furzeri (turquoise killifish): 107376252
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Entry
107376252 CDS
T05163
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107376252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nfu03041
]
107376252
03009 Ribosome biogenesis [BR:
nfu03009
]
107376252
Enzymes [BR:
nfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107376252
Spliceosome [BR:
nfu03041
]
Complex A
U1 snRNP components
U1 related factors
107376252
Complex B
107376252
Ribosome biogenesis [BR:
nfu03009
]
Eukaryotic type
Pre-60S particles
Helicases
107376252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
107376252
NCBI-ProteinID:
XP_015800745
UniProt:
A0A1A8A8P9
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All DBs
Position
sgr03:complement(70492135..70497078)
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AA seq
615 aa
AA seq
DB search
MPGYADRDRGRDRDRGYGGGPPRFGGGRGGGGGGGKFGNPGDRLRKKHWNLDELPKFEKN
FYQQHPDVAHRSPQELEQYRRTRAITVKGRECPNPITKFHEASFPTYVMEVINKQNWTEP
TPIQSQGWPLALSGQDMVGIAQTGSGKTLAYLLPAIVHINHQPFLERGDGPICLVLAPTR
ELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQLRDLEKGVEICIATPGRLIDFLEAGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEY
VQINVGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKRRCDDL
TRRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINFD
YPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQAGDLISVLREANQAINPKLIQMAEE
RGGRSRGGRGDYRDRDRFSSGRRDYGGGRDRDGGRNFNGPKSFGTNSQNGGYGSSNGTSN
GYGGGNYGNGQSNFNNSQGGSFGGQNNFQNQQFTPNNAVAQNGASHPPFPFTQGQAQQQH
PPPMAPYSMPPQFSQ
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatatgctgacagagaccgcggcagggacagagacagaggctatggcggtgga
cctccccggttcggtggaggccgtggtggtggaggaggtggtgggaagttcggcaacccc
ggtgaccggctgaggaagaagcactggaacctggacgaactcccgaagttcgagaagaac
ttttaccagcagcatcccgacgtggcccataggtcaccgcaagagcttgaacagtacaga
aggaccagagccatcacagtcaaagggagagaatgtccaaaccccatcacgaagttccat
gaagctagcttccccacttatgtaatggaggtgatcaacaaacagaattggacagaacca
acacccatccagtctcaaggttggcctttggccctcagtggccaggacatggttggcatt
gcacagactggttctggcaagacgctcgcttatctgctgcctgcaattgtccacatcaac
caccagcctttcctggaacgtggcgatggtccaatttgtctggtgctagccccaactcgt
gagcttgcacagcaggtgcaacaggtggccgcagaatatggcagagcttctcgtctgaag
tccacctgcatctacggaggagcaccaaaggggcctcagcttcgtgacctggaaaagggt
gtcgagatttgtatcgccactccaggaaggctcatcgacttccttgaggcaggaaagacc
aacctccgcaggtgcacgtaccttgtgctggatgaggcagacaggatgctggacatgggc
tttgagccacagatcaggaagattgttgatcaaatcaggcctgaccgacagacactgatg
tggagtgccacttggcctaaagaggtccgccagctggctgaggacttcctgaaggagtac
gttcagatcaacgtcggagcactgcagcttagtgccaaccacaacatcctgcagatcgtt
gatgtttgcaatgatggagagaaggagaacaaactcattcgtttgcttgaagagatcatg
agcgagaaggagaacaagaccatcatctttgtcgagacaaagaggagatgtgatgatctc
acgcgcagaatgaggagggatgggtggccggctatgggaatccatggtgacaaaagccaa
caggagagagactgggttcttaatgagttcaaatttggaaaagctccaatactcattgct
acagatgttgcctccagaggtctagatgttgaagatgtgaaatttgtcatcaactttgac
taccccaacaactctgaggactatatccaccgcattggcagaactgctcgtagccaaaag
acgggcactgcctataccttcttcacccccaacaacatgaggcaggctggggatctcatc
tctgtgcttcgtgaagccaaccaggccatcaaccccaagctgattcagatggctgaggaa
aggggaggtcgttcaagaggcggtagaggtgactatagggatagggacaggttttcctct
ggaaggcgcgactacggcggcggtagagaccgggacggcggtagaaactttaatggaccc
aagtcctttggcacaaattcacagaatggaggctatggcagcagtaatggtaccagcaat
ggctacggtggtggaaactacggtaatggacaatccaacttcaacaacagccaaggagga
tccttcggtggtcagaacaacttccagaaccaacagtttactccaaataacgctgttgca
cagaacggtgcgagccaccccccattccccttcactcagggacaggcccaacagcagcat
cctccaccaatggcaccatactccatgcctcctcagttctctcagtaa
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