Nothobranchius furzeri (turquoise killifish): 107376402
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Entry
107376402 CDS
T05163
Symbol
tnrc6a
Name
(RefSeq) trinucleotide repeat-containing gene 6A protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107376402 (tnrc6a)
03036 Chromosome and associated proteins [BR:
nfu03036
]
107376402 (tnrc6a)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107376402 (tnrc6a)
Chromosome and associated proteins [BR:
nfu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
107376402 (tnrc6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
107376402
NCBI-ProteinID:
XP_015800950
UniProt:
A0A1A8A0C2
LinkDB
All DBs
Position
sgr03:65914761..65969555
Genome browser
AA seq
1827 aa
AA seq
DB search
MAPIRDSVSHSPNQTGLEHPGLDSQYEPSPWSSGSPCSSDTNSNWGKVLVDGSTDKSRNA
CSTSSCVWPPSSSSFSCSSSSSSGCGSGSDPELASECMDADSNSSVGSEKNLSTVATATV
MMMSANASSSVSSTASSPSFSLVTPPMMVGVTVNGDGNNHLGGGVGTISSANNGNIISGS
SHYSMAGPNSIGSNNMSNHNNKLVTTSGVWGSQPGSNMNTTGSSNTYINGGSNPNANHGS
WPQNPSPVSQRQAQGMSSKLGVVPQQGSLLGWGGMAAPDSSMIEDTEMDNGTFSSKVLGG
SNSGSGGLQPTNLNTESNGPNNTIMMNTTTTNTTVTSSPLDSTTSPQLSGDCSWGSIGGG
NGGPLANGNCSLAPQHPQGDTGAFGRPWGAAAYPVDKGPLNADTVNPQISSTAAFKSNNN
HNNTGAVQWDQGPTSNPNQPQSNLSWCVGSNQTPGSTGQTPGNGNPTTMGPPAGIPRPWG
SSASSSSSSSSSSTSNSKMSNGEWGSTAPCNSNSDVGSQKGSSANNGWKSLEDDAIGMGG
AGGSGGGQGPGSVIGGWGRSGGSEGSAESSGGRSSSDRDNSQSKGGNRRKVIHTTPIPPP
LTHAEVDPRVLSNTGWGQTPIRQNTAWDVNTPAKIQDLRKQSGVGSGWSTAAPAAPSQNS
GGWGVGPSSSGPGNGGSGWGEQRQTSGWDTKGPSNGGGGSSSWEDESSYKNNNSNTWNNN
MKDERSNTWTNTPKVQQGWGSGSESWGGNVDGPRSGSSKHWGEPQKGGGSVGLDSDSDRS
GSGCWSEPSRTNTSSSNAWAGSGGSNAPDQSTPNPGSNWGDSATKPNPQNNSKGWGEHDK
NNHGAQNWSESGSKPSNEWGKDPEPRMSRANQGSNKPTGWLGGPMPTVGPKEEVSTGWEE
PSPESIRRRMEIDDGTAAWGDPGKYGGGSVNMWNKTSRSEQETTGPPQQNQPHSAHNSVQ
PMQHLNQDKSSGSGWGEDYSQHKDSSSWREPAAGPPVTLDNGTSAWGKPTDSSAAWEEPS
RKSRESVWDSQHKSGPKPMETWCSDVSMSNSWDQEEEVEIGMWSNNQQDNRSHDQNTWNY
KHKTSNKMSKPVTKQDDWSKPLISQFNNMNFTRDSPDESMKLVSGMAADKRMDTSSMDFN
GGVGKNPGSRHQFHKESAVDRSPYFDKLSTYDSPAPDELSSSQSMGVSPSRSAQPVPHLG
SGPYPSRSNSGPSQQNVNPLLGSSSVAQGRVGPQAQPPPQPSLRNQVPPPILPSQVPPSL
LKYPGANSCLNPLLAPQQMAMINQLSQLNQLNQINQLQRLLLQHQQQQKAHTQRAMPVGR
EQMRPMDSSPSLMQPPRHLDPSLPKQGLPLKAYPENYLSQNPSDMQKDAAAIGPFNNFPL
SLTSNLNVPLDMGVGGGAVNYKEPPQSRLKKLWAADPLEQNSKTGAMSTGLRLEDSPFYD
FLSPGPSPLSPPGQSIGSVGDCWPPRANSPPPHGNTVTWPPEFRPGEPWKGYPNIDPETD
PYVTPGSVINTLSINTVRDTDHLRDRNNGPSSSLNTTMPSNSAWSSIRASGHSGSLTSTA
QSTSARPSESKWSPGGGSVSNSSLAHELWKVPLSPKPLPVPAPSRPPPGLTSQKPNPASS
GWDGSTLRLGGWGSTESRYTPGSSWGESSSSGRTQWLVLKNLTPQIDGSTLRTLCMQHGP
LITFHLNLPHGNAVVCYSSKDEAAKAQKSLHMCVLGNTTILAEFASEEEINRFFAQGQSL
ATPSSGWQAIGSSQSRMDQSHPFPSRTSEPNQWGSGFVHRSSLWGGSNYSSSLWGSPSGT
EPGGISSPSPISSFLPVDHLTGGGDSM
NT seq
5484 nt
NT seq
+upstream
nt +downstream
nt
atggctcccattcgggattccgtcagccactctcctaaccaaacaggtttggagcatcct
ggcttggactcgcagtatgaaccttctccctggtcctccggctccccgtgcagcagtgac
acgaacagcaattggggcaaagtcttagtggacggaagtacagacaaatcccgtaacgct
tgttcaaccagctcctgtgtctggcctccttcctcttcttcgttttcctgctcttcctct
tcgtcatctggctgtggttcaggatcagatcctgagttggcgtcagaatgcatggatgca
gattctaactcttcagttggctcagagaagaacctcagcacggttgccacagcaacagta
atgatgatgtcggcaaatgcctcttcctctgtgtcttctacagcttcgtccccctctttc
tctctggtgactcctcccatgatggttggcgttactgtgaatggagatggcaacaatcat
ctgggtggaggtgtgggaaccatcagcagtgcaaataatggaaatattatatctggatcc
tcacactactccatggctgggcccaacagtattggcagcaataatatgagtaaccacaac
aacaaactggtcaccaccagtggtgtctggggctcccagccaggcagcaacatgaatacc
acgggcagcagtaacacctatatcaatggtgggtcaaacccaaatgccaatcatggttcc
tggcctcagaatccaagtccagtgagccagaggcaggctcaggggatgagctccaaactg
ggtgtggttcctcagcaggggtccttgctgggctggggtggcatggcagccccagacagc
agtatgatagaagacactgagatggataatggtacatttagcagcaaggtgttgggaggc
agcaacagtggaagtggtggtctgcagcctaccaacctcaacactgaatccaatggacca
aataacactatcatgatgaatactactactactaacaccacagtgacctctagtccactg
gactctaccacctcaccccaactaagcggggattgttcctggggttccattggaggagga
aatggggggccgttggccaatggaaactgttcattagctccccagcacccccaaggagat
actggggcctttggtagaccttggggcgcagctgcttaccctgtagacaagggtcccctg
aatgcagacactgtgaacccccaaatctcctctactgctgctttcaagagtaataataac
cacaataacactggggccgtacagtgggaccaaggacccaccagtaacccaaaccagcct
cagagtaacttgtcctggtgcgttggctctaatcaaacaccgggctctacgggacaaaca
ccaggaaacggaaacccaactacaatgggtcctccagcagggatacctcgaccctggggg
agcagcgcgtcctcttcctcctcctcttcatcatcttccacatctaacagcaagatgtca
aatggagagtggggatcaacagctccttgtaacagcaattcggatgtgggaagtcaaaaa
ggaagttcagccaataacggctggaagagccttgaggatgacgctataggcatgggtgga
gcagggggttctgggggaggccaaggcccgggaagcgtcattggaggctggggtcgctct
ggaggaagtgaaggcagcgcagagagctctgggggtcggtccagctcagacagagacaac
agccagtctaaaggaggaaaccgcaggaaagttatccataccacaccaataccaccacct
ctgacccacgccgaagtggacccaagggttctgtccaataccggatggggacagacgccc
atacggcagaacaccgcctgggatgttaacactcctgcaaaaatccaggatctcaggaag
caaagtggcgtaggctctggctggagcaccgcagccccggcagctccatcccagaactct
ggaggttggggggttgggcccagcagctcaggcccaggtaacggaggttctggctgggga
gaacagagacaaacatctgggtgggacactaaaggtccctctaatggaggaggtggaagc
agtagctgggaggatgagtccagttacaagaataacaacagtaacacctggaacaacaac
atgaaagatgagaggtccaatacatggaccaatactcctaaggtgcagcagggctggggt
tccgggagtgagtcctggggcgggaatgtcgacggtcccagatcggggtccagcaaacac
tggggagaacctcagaaaggtggaggttcagtgggcttggacagtgacagtgaccggtcc
ggctctggctgctggagtgagccaagcagaaccaacaccagcagcagcaacgcctgggct
ggcagtggagggtcaaatgctcccgaccagagcactccaaacccgggctccaactgggga
gactcggccaccaaacccaatcctcagaataacagtaaaggctggggcgagcacgataag
aacaaccacggagctcagaactggagcgaatccggttctaaaccttccaacgagtggggg
aaagaccctgagcccaggatgtccagagccaaccagggttctaacaagcccacgggctgg
ttgggaggtccgatgcccacagtgggtcccaaggaagaagtttcaactggatgggaggaa
ccttctccggagtcgattcgtcggagaatggaaatcgatgatggaactgcagcttggggt
gaccctggtaaatacggcggtggatctgtcaacatgtggaacaagacctctcgctccgag
caggaaaccacgggcccgccccaacaaaatcagccccactctgcacacaactccgttcag
cccatgcaacatctcaaccaggacaagagctccggttcgggttggggtgaagactacagc
cagcataaggactcgtcctcgtggagggagccagcagctgggcctcctgtgacgttggac
aacgggacgtctgcttggggaaagcccacggacagcagcgctgcctgggaggaacccagc
aggaagagccgggagtccgtgtgggacagccagcacaaatctgggcccaagcccatggag
acgtggtgcagcgatgtgtccatgagcaacagctgggatcaggaagaggaggtggagatc
ggaatgtggagcaacaaccagcaggacaaccggtcccacgaccagaacacctggaactac
aagcataagacctccaacaagatgagcaaacccgtcaccaaacaggatgactggagcaaa
cctttaatcagccagttcaacaacatgaacttcacaagggactctcctgacgagtccatg
aagctggtgtcagggatggcagcagacaagcgcatggacacgagcagcatggacttcaac
ggcggcgtggggaagaaccccgggtcccgacaccagttccacaaggagtctgctgtggat
cgtagtccttactttgacaagctttctacctatgatagcccagctcctgacgagctctcc
tccagtcagagcatgggcgtgtcccctagccgctccgctcagcctgtcccccatctcggt
tctgggccttacccgtcccgctctaattctgggccttctcagcagaatgtaaaccccttg
ttgggaagcagcagtgtagcacagggccgagtcggcccccaggcacagcccccacctcaa
cccagtcttcgcaaccaagtgcctccacccatcctgccctctcaggtccccccatccctg
ctgaagtaccccggagccaacagttgtctgaacccgctgttggctcctcagcagatggcg
atgatcaaccaactctcccagctcaaccagctaaaccagatcaaccagttgcagcgtctt
ctccttcagcatcagcagcagcagaaggctcacacccagagagccatgccggtgggtcgt
gaacagatgcgtccaatggactcatcaccttcactgatgcagcctccgcgacacctggac
ccctcgctgccaaagcagggtctgccactcaaagcttaccctgaaaactacctgtcccag
aatccctctgacatgcagaaggacgctgccgccatcggacccttcaacaacttcccttta
agcttgacctctaacctgaatgtacccctggacatgggcgtaggtggtggagccgtgaac
tacaaagaaccaccccagtccagactgaagaaactttgggctgctgaccctctggagcag
aacagcaaaaccggtgctatgtctactgggctgcgtctggaggactctcccttctatgac
ttcctgtctcctggcccatcccccctgagtcctcctggccaatcaattggctctgtgggt
gattgctggccaccccgtgccaactcccccccaccccatggaaacactgtcacatggccc
ccagagttccggcccggcgagccctggaaaggttaccccaacatcgaccctgagactgac
ccttacgtgacccctggcagtgtcatcaacaccctctccatcaataccgtccgtgacaca
gaccacctcagggacaggaacaacgggccatcctcatcactgaacaccacgatgccttcc
aacagtgcctggtcatccattcgtgcctctggccacagcggctctctcaccagtacagca
caaagcacttcagctcgacccagtgagtcaaagtggtctcctggtggtggttctgtatcc
aactcctctctagcccacgagctttggaaggtccccctgtctcccaagccgctgccagtg
ccagcgccctccagaccaccgccgggcctcaccagccagaagcccaaccctgcctcctct
ggctgggacggctctaccctgaggctggggggctggggctccacagagtccagatacaca
cctggttccagttggggtgaaagcagcagctcagggagaacccagtggcttgttctgaag
aatctcacacctcagatcgacggctctaccctgaggaccctgtgcatgcagcacggccct
ctgatcacattccacctcaacctgccacatggtaacgctgtggtttgctacagctcaaag
gatgaggctgccaaggcccagaagagcctgcacatgtgtgttttggggaacactactatt
ctggctgagtttgccagcgaagaggaaatcaaccgtttctttgcacaagggcagtctttg
gccactccctcctctggctggcaggccatcggctcttctcagagcaggatggatcagtct
caccccttccccagccgtacttccgaaccgaaccagtggggcagcggctttgtgcacaga
tcctccctctggggcggctccaactattccagtagcctgtgggggagccccagtggcacc
gagccaggggggatcagcagcccctctccaatcagctccttcctcccagtggatcacctg
actgggggcggagactccatgtga
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