Nothobranchius furzeri (turquoise killifish): 107376407
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Entry
107376407 CDS
T05163
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
nfu01001
]
107376407 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
nfu04054
]
107376407 (ciita)
Enzymes [BR:
nfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
107376407 (ciita)
Protein kinases [BR:
nfu01001
]
Serine/threonine kinases: Other
TAF1 family
107376407 (ciita)
Pattern recognition receptors [BR:
nfu04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
107376407 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
LRR_8
NB-ARC
NPHP3_N
AAA_22
nSTAND3
AAA_16
nSTAND_NTPase5
nSTAND6
TsaE
DUF815
ATPase_2
AAA
AAA_24
RsgA_GTPase
SRP54
Motif
Other DBs
NCBI-GeneID:
107376407
NCBI-ProteinID:
XP_015800961
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All DBs
Position
sgr03:65417294..65453834
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AA seq
1412 aa
AA seq
DB search
MLQAMVPGDIMVSDCEYLVQDVEGMRFAAPFLTLDPCFGDSSCTEVSMMLPTDGEKQDEH
HFSTLDLAELSAAHFRIVGAAGVESPVPACADTETSDINTLEDHFDFLPTDERIVETRDA
VCSTTDDLCGTNSVLSERRLLSPDTSMDTKTVMQDNYFTPETCFNVTAGLLGGLEDSSSF
ALCVATCSSMNAQGEILENSNSHRDAKMQVCDQELFNFDFFPEDLSEFMDESCLDPSVLL
NDQLGWMDDLNHDGTLMQLEVPESPNPNGQKRAQKQTDKSRVKRKKQRTSQSQRCARVKK
RKTDEPVTLEVNAELIVSQGLDPVTVPTLTDQTGELCTPPPLVRVSPAQPGAPIPLQFIT
IPDSPGYKVVQLSSSPPPSLIRLPLPSMTATPTYIFVPATPPTCKRQVPPHSPVDGAVAP
VLMSSFPPGSLSDTASKAMSPCYTSPPSPCNELPPCKEPPKYPTVVEIPKGVKDYIQQYK
AHMAERSQAIEAGLTLTSHYVDVQVIRREILRLGKNTNKCLDMELIITGDIDRQKNSVGH
SQIFSSLNEDKCKRYILLFGKAGMGKTTLIKKLCLDWSKDRTPQFDFVFVLDGKQLTLTE
PVYSLQTLLLSVSSFASPCTDLDGVYAQILAASKRVLIIFDGFEELRDYEMLLQTLEKEL
VTSLQKDSKLQSFTIRQLFSAILQRVLLPGCTLLLVTRPRGAASQLLRRADSLLELSGFT
TTHIETYLSKYFPDSELRDAAVDHLKSSSYLNLLCWNPGLCHLVCTVLERSKCSEALPRT
LTGLCHQVICLKIERDRSAGTPDESQTEEQSGHETQSKVIDSCRARRSLRSHSTSSRGAG
CAQRAKRTKRQEKQQETVNEDDCQEAEKELLSQLSSLAWEGVKSNKSNSSILPAEQALST
KLREFGLRTGLLVSQRLRTKTDKRGREGQDGEGGGKEDKNESGGVEDGEEKVKEMDINAV
DDGGDLLLWANSFLRSFMAAVHLSLSRTVPERSFLQILPFQTSAKARRKPQRGEFELTQR
FAVGLLFQSRTELNRLHSYTETVFRDMVASKQALVTKHLEGLSFSDLSPAQVLELCNYVH
ETGFTHEESCGETGSRMLNHLAANLPERLTFRGVPLSPPETFIVQNALKRGGAEVRSFCL
DLEDSGIQIRGLRDLVGLSNINTYRACIADVITLWEQLKQSGEDEFLQGAVSKFKIHPLK
ATQVCHIEHLEKLVSIHVRKKLSASSSQSDSFLADGVPAVRELLKLEFELGPENGPLVLP
KLWDLLPGLQNLQHLDLEKSKIGDKGAEKLADALVTLSSLEILNLSQNCIGDEGVKKLAL
TFKELPKLHCLSLYSNVISDEGAESLAAVLPHMASLTELDVKYNKMTDVGAQILGASLKN
CTKMKTLRMWNQCIPYGMFERLQQQDSRILWH
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgttgcaggcaatggttcctggtgacattatggtgtcagattgtgagtaccttgttcag
gatgttgaagggatgaggtttgcagcccctttcctgacacttgatccatgttttggtgac
tcttcatgcacggaggtgagcatgatgcttccaacagatggagaaaaacaggacgaacat
catttctctactcttgatttggcggaattaagtgcggctcacttcagaattgttggagca
gccggagtcgaatcacctgtcccagcttgtgctgacacagaaacgagcgacatcaacact
ctggaggaccatttcgatttcttgccaacagatgaacgaatagttgaaacaagagatgct
gtgtgttcaacaacagatgacctatgtggaaccaattctgtactttcagaaagacgccta
ctttctccagatacatctatggacactaaaactgttatgcaagataattattttactcca
gagacgtgtttcaatgtgactgcggggcttttaggtggtctggaagatagttccagcttt
gctctttgtgtagcaacctgcagcagcatgaatgcacaaggagaaatccttgagaacagc
aattcacacagagatgccaagatgcaggtctgtgaccaggagctctttaacttcgacttc
tttccagaggatttatccgagttcatggatgagagctgcctcgacccaagtgtgctcctt
aacgatcagctgggatggatggatgacctcaaccatgatggtactctcatgcagttggag
gtcccagagtcaccaaaccccaatgggcagaaaagggcacaaaaacaaacggacaaatcg
agagtcaagagaaagaaacagagaacttcccagtctcaacggtgcgccagagtcaaaaaa
cgaaaaacagatgaaccagtaaccctggaggtaaatgctgagctgattgtctctcagggt
cttgatccagtaaccgtgccaactctaacagatcagacaggtgaactctgcacccctcca
ccgctggttcgggttagccccgcccaaccgggagctcccattcccctccagttcatcaca
atcccagacagtccaggatacaaagtggtccagttgtcctcttctcctcctccatctctc
atcaggctgccgctccccagcatgacagccacacctacgtacatatttgtccctgccact
ccaccaacttgcaagcgccaagtaccaccacactctccagtggacggtgctgttgcgcct
gttttgatgagttcgttcccccctggttctttgtcagacacagccagtaaagccatgtct
ccttgttacacctcgcctccctccccctgtaatgagctgccgccttgcaaggaaccacca
aagtatcccactgttgttgaaattccaaagggtgtaaaggactacatacaacaatacaaa
gcacatatggctgaaaggagtcaggctattgaggcgggcctgaccctgacctctcattac
gtcgatgttcaagtgatcaggagagagattcttcgcttgggaaaaaacacaaataaatgt
ttggacatggaacttatcatcactggagacatcgatcgacaaaaaaactctgtaggacac
agtcagatcttctcaagcctaaatgaggacaagtgcaaacgttacattttgctttttggg
aaagcaggcatgggaaaaaccacactgatcaagaagctgtgtctcgactggtctaaagac
cgcaccccccagtttgactttgtctttgtattagatgggaaacagctgactctaacagag
cctgtctatagtctccagacacttctgctcagcgtttcctcctttgcttctccttgcacg
gaccttgatggcgtatacgctcaaatccttgcagcctctaaacgcgtgcttatcatcttt
gatgggtttgaggagctgcgggactatgaaatgctgctccagactctagaaaaagaatta
gtgacgtcattgcagaaggacagcaagttgcagagcttcacaataaggcagttgttctca
gccatccttcagagggtcttgcttccaggttgcactcttctactcgttacccggccaaga
ggtgctgccagtcagttactccggcgagcagacagccttctggagctgtctggcttcacc
acaacacacatagagacgtacttgtcgaagtacttccctgattctgagctcagagatgct
gcagtggaccacttgaaatccagcagctatctaaatctcctctgctggaaccctggattg
tgccacctagtgtgcacggttttagaacggtccaaatgttcagaggccttaccaagaaca
ttgaccggcctctgtcatcaagttatatgtctgaaaatagaaagagacagaagtgcagga
acgcctgatgaaagccaaacagaagaacaatcaggacacgaaacgcaatcaaaggtcata
gacagttgtcgtgcaagaaggtctctaagaagtcattcgacgagctcaagaggagctgga
tgtgcccaaagagctaagagaacaaaaagacaggagaaacagcaagagacggtgaatgag
gatgactgtcaggaagcagaaaaagagctgctgtcccaactcagctctttggcctgggag
ggggtcaaatccaacaaatcaaactcttccatccttcccgcagaacaagcactatcaacc
aaactcagggagtttggcctgaggacgggactgctggtctctcagcgcctgaggacaaag
acggacaaaagggggagggaggggcaagacggggaaggaggggggaaagaagacaaaaat
gaaagtggaggagtggaggatggagaggaaaaagtaaaagagatggacattaatgctgtg
gatgatggtggtgaccttctgctgtgggccaactccttccttcggagtttcatggctgct
gttcacctgtctttatcaagaacggtgccagagcgttcctttctccagattctccctttc
cagacgagtgcaaaagcccgccgaaaacctcaaaggggggagtttgagctcactcagcgg
tttgcagttggactcttgttccaaagcaggacagaactgaacagactccattcgtacaca
gagaccgtcttcagagacatggtggctagcaagcaggctttagtgaccaaacacttagaa
ggcctctccttcagtgatctgagcccggctcaggttctggagctgtgcaactacgttcac
gaaaccggttttacacacgaagagagctgcggagagactggaagcagaatgctgaaccat
ctggcagcaaatcttcctgaacgcctgactttccgtggagttcccctcagcccaccagaa
acgttcatcgtgcagaatgctctcaagcgaggtggagctgaagttcgaagtttctgtctg
gatttggaggactcggggatacagatccgtggacttagagatttggtgggcctcagcaac
atcaacacgtacagggcgtgcattgctgatgtcatcaccctctgggagcagctgaagcag
agcggtgaagacgaattcctacaaggagcagtgtccaagttcaaaatccatcctctgaaa
gctacacaagtgtgtcacattgagcacctggaaaaactggtcagcatacatgtgcgtaag
aagctgtcagcgagctccagccaatcagattccttcttggcagacggggtgccagcagtt
agggagttgctcaaactggaatttgagcttggcccagaaaacggcccattggttctcccc
aagctttgggaccttctgccgggactacaaaacctgcagcaccttgatctagagaagagt
aagattggggacaaaggagcagagaaactggccgatgcattagttactctgagctctctg
gagatactaaatctgtcgcagaattgtataggagatgaaggagtgaagaagctagcactc
acatttaaagagctacccaaactccactgtttaagtctttacagcaatgtgatttctgac
gaaggtgcagagagtttagcagctgtcctcccacacatggcgtctctcacagagcttgat
gtgaagtacaacaagatgacagacgttggtgctcagattctgggagcaagtttgaaaaac
tgcacaaaaatgaagacattgaggatgtggaaccagtgtattccttacggcatgttcgag
agacttcagcagcaggatagccgcatcctttggcattaa
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integrated database retrieval system
