Nothobranchius furzeri (turquoise killifish): 107377019
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Entry
107377019 CDS
T05163
Name
(RefSeq) collagen alpha-5(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04510
Focal adhesion
nfu04512
ECM-receptor interaction
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107377019
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107377019
09142 Cell motility
04820 Cytoskeleton in muscle cells
107377019
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nfu04147
]
107377019
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107377019
Exosome [BR:
nfu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107377019
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107377019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107377019
NCBI-ProteinID:
XP_015801873
UniProt:
A0A9D3C3B3
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All DBs
Position
sgr04:complement(17730653..17753797)
Genome browser
AA seq
1330 aa
AA seq
DB search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NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggaggtgttgttggtcccaagggtgatgctgggtttcctggatctcctggcccc
aaaggagaatcaggaccaccaggtttgacaggacccccaggagcaccaggacttccaggt
gtaggtggcagtggacaacctgggcctccaggtttcccaggtgataagggtcagaaagga
gatcccgggacagcagcaatctcttatccgggtcctcctggacaggatggattcccggga
cttcctggagtaccggggccccctggacctccaggcgcttctagctcaggacaaaactgc
atccctggggagccggggcctcctgggctccagggtgaaacaggttacccgggagagcag
ggccagaaaggtcaaaaaggagagacgtgtgtgaactgcttcagtgaaggcatttccaca
cctggacccccaggacctccagggccgcctggatttcctggaaataatggcccacaaggg
atcaagggagacagaggattaccgggaacacctggttttcccggaccttctggtcagcct
ggtcctcaaggtttaccaggcctttctggggagaaaggtgacccaggtgatgctcttaca
cttcctggtctgagaggagagaagggtgacactggcttccccggaccaccaggtctgccg
ggcttggatggtcgacctggtcgtgatgggccaaccggaccgcctggtcccaagggagct
cctggttctttactaataaaaggagaacgagggtctcctggtgagccaggtttccctggt
attcctggagacagaggcccccaaggccctcctggctttggacctccaggaccatcaggg
gaaaagggtgttcaaggcatctcaggaatacctggagctcctggtgcaccaggtcctaaa
ggtgaaccaggtctaacaataacagagaaaggtctaccaggaccaagaggattggatggc
gcaccaggacagcctggtggaccaggttccccaggtcagcccggtcagcctggtttacca
ggtttaccaggacaaaagggtgatattggatcaccgggaattggactcccgggtccttct
ggatccaaaggattcccaggtattcctggccagccaggagcacctggaggtccagggaga
ccaggaattgatggtctccctggcccacaaggatttcctggacccaagggtgaacctgga
tttggacttcctggtcccccaggcttaccaggacaacctggacctaagggtttcacagga
ccaaagggagatactggtttcccaggcaatcctggttcaccagggcgatctggttttgat
ggatctccaggatcaaagggtgaacctggtacacctggtttgccaggtgcacgtgggcaa
cctggactacctggcattggcttaccaggacctgcaggtcctcctggaccaccaggatct
gtaggaccaccaggttacccaggagcaaatggagcaaaaggagatcctggccctccaggt
ctagacattccaggtttaccaggagacagaggaaatccgggtttcccagggctgcctgga
ccaataggagtcccgggaccccctggaggaccgggacgggatggagcacctggattccct
ggtcagaaaggtgacatgggtcccatgggatctccaggacctcctgggggacctggttta
ccgggtgggccagggcctcaagggcttaaaggtgaacctggattcccaggtagagatggt
ggaccaggtgctcctggtattaaaggagagaagggagaagccggtctgcgtggaccccca
ggaattgcctctcttgaaacaaaaggaaccaaaggcgatactggaccaccagggttacct
gggtcttcaggaccaaaaggtatccctggtctccctggagactctggaataccaggagca
gatggtcgccctggtgttcctggaccaccaggtcccaaaggggaacctggcatcccaggt
ggtccagggtctcctggaattccaggattaaaaggcaatatgggagatatgggaattcca
ggacctccagggccaaaaggcacattgggtagtgtaggtaggccaggaaccccaggtcag
ccgggaattccaggcctccaagggcccaaaggtgaaccaggttcagctggccttggacca
ccaggacttaagggtcaaaagggtgagtcaggtcagccaggattcccaggaaatcaagga
cttaaaggaaacccaggacaacctggtctaccaggtttaccaggaatacccggggaaaag
ggtgatcttggccatccaggattccaaggtccccctggtcttcccggtcctaagggtctt
gatggaggacctggtgccccaggcctcatgggagctccaggtagaccaggggaacctggt
agagcagggccacctggactacttggagagaagggtcagccaggtcgagatggaatccca
ggaccagccggagttaaaggagaaccagggcttccaggttttggtggtcctggtccttca
ggtcttccagggccaccaggtgctaaaggagacataggccccccaggtcctgctggtagt
ccaggttttcctggtcctaaaggagacaacggccagcccggtggcccaggtcttccaggt
attactggccccccagggccttcaggacaacctctgcaaggtccaaaaggaggccaagga
cctcctggaccacctggaagatcaggaccacctggtccagagggtccccgtggactccca
ggaaatggtggtgttaaaggagagaagggtaatcccggcgctcccggccagcctggcttc
cctggtcagaaaggagattctggttttcaagggcctccgggcaaccctggaaatcctggt
gttcctggtatcaaaggagacaatggactaccgggcattcctggattccctggactaaag
ggagaaccaggactgcctggaccaagtggccttactggagatcctggcaacattggacaa
cctgggctccctggtgatcctgctattgctcccccttccttaagggtgaaaggagaaaga
ggacctcctggtccagctggcgtacctgggcctccaggaccacgtggtccacctggttct
ggtggacaatcaggcccaccgggtgaatctggagatcctggttctcctggtgctactggt
ttcaacggcccacctgggaggaagggagacactgggcccactggtccacctggccagcgt
ggtgacattggcccccgtggttcagatggtccacaaggtccccctggccctccagggtca
gtctcagcatcccacggtttcctcatcaccagacacagccagactgatgaactgccctca
tgtccaactgggactagctctatctatgaaggttactctttgctgtatgtgcagggcaac
gagagggcgcatggacaggaccttggcacagctggcagctgcctgagtcggttcagcccc
atgcctttcatgttctgtaacatcaacaacgtgtgcagctttgcctcccgtaatgactac
tcctattggctgtccacgccaaagcccatgcctatgtccatggaggcgatcactggagtg
agcatcgagccttacatcagcaggtgtagggtgtgtgaagctcctgctatggtgattgcc
gtccacagtcaaaccattcaaattcccacatgtcctgaaaactgggaacccctgtggatt
ggatactcatttatgatgcacaccagcgcaggtgcagaggggtccggtcaggctctggcc
tcccccggttcctgtctagaggagttccgcagcactcccttcattgagtgccacggcaga
gggtcgtgcaactatttcagcaactcctacagcttttggctggctactgtagaacgatca
gagatgttcaggaaaccccagtcggagaccttaaaggcgggcaacctacggtcacgcatt
agtcgttgtgtggtctgcatgaagaggacgtaa
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