Nothobranchius furzeri (turquoise killifish): 107377019
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Entry
107377019 CDS
T05163
Name
(RefSeq) collagen alpha-5(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04382
Cornified envelope formation
nfu04510
Focal adhesion
nfu04512
ECM-receptor interaction
nfu04518
Integrin signaling
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107377019
04518 Integrin signaling
107377019
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107377019
09142 Cell motility
04820 Cytoskeleton in muscle cells
107377019
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
107377019
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nfu04147
]
107377019
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107377019
Exosome [BR:
nfu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107377019
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107377019
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107377019
NCBI-ProteinID:
XP_015801873
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All DBs
Position
sgr04:complement(17730653..17753797)
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AA seq
1330 aa
AA seq
DB search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NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggaggtgttgttggtcccaagggtgatgctgggtttcctggatctcctggcccc
aaaggagaatcaggaccaccaggtttgacaggacccccaggagcaccaggacttccaggt
gtaggtggcagtggacaacctgggcctccaggtttcccaggtgataagggtcagaaagga
gatcccgggacagcagcaatctcttatccgggtcctcctggacaggatggattcccggga
cttcctggagtaccggggccccctggacctccaggcgcttctagctcaggacaaaactgc
atccctggggagccggggcctcctgggctccagggtgaaacaggttacccgggagagcag
ggccagaaaggtcaaaaaggagagacgtgtgtgaactgcttcagtgaaggcatttccaca
cctggacccccaggacctccagggccgcctggatttcctggaaataatggcccacaaggg
atcaagggagacagaggattaccgggaacacctggttttcccggaccttctggtcagcct
ggtcctcaaggtttaccaggcctttctggggagaaaggtgacccaggtgatgctcttaca
cttcctggtctgagaggagagaagggtgacactggcttccccggaccaccaggtctgccg
ggcttggatggtcgacctggtcgtgatgggccaaccggaccgcctggtcccaagggagct
cctggttctttactaataaaaggagaacgagggtctcctggtgagccaggtttccctggt
attcctggagacagaggcccccaaggccctcctggctttggacctccaggaccatcaggg
gaaaagggtgttcaaggcatctcaggaatacctggagctcctggtgcaccaggtcctaaa
ggtgaaccaggtctaacaataacagagaaaggtctaccaggaccaagaggattggatggc
gcaccaggacagcctggtggaccaggttccccaggtcagcccggtcagcctggtttacca
ggtttaccaggacaaaagggtgatattggatcaccgggaattggactcccgggtccttct
ggatccaaaggattcccaggtattcctggccagccaggagcacctggaggtccagggaga
ccaggaattgatggtctccctggcccacaaggatttcctggacccaagggtgaacctgga
tttggacttcctggtcccccaggcttaccaggacaacctggacctaagggtttcacagga
ccaaagggagatactggtttcccaggcaatcctggttcaccagggcgatctggttttgat
ggatctccaggatcaaagggtgaacctggtacacctggtttgccaggtgcacgtgggcaa
cctggactacctggcattggcttaccaggacctgcaggtcctcctggaccaccaggatct
gtaggaccaccaggttacccaggagcaaatggagcaaaaggagatcctggccctccaggt
ctagacattccaggtttaccaggagacagaggaaatccgggtttcccagggctgcctgga
ccaataggagtcccgggaccccctggaggaccgggacgggatggagcacctggattccct
ggtcagaaaggtgacatgggtcccatgggatctccaggacctcctgggggacctggttta
ccgggtgggccagggcctcaagggcttaaaggtgaacctggattcccaggtagagatggt
ggaccaggtgctcctggtattaaaggagagaagggagaagccggtctgcgtggaccccca
ggaattgcctctcttgaaacaaaaggaaccaaaggcgatactggaccaccagggttacct
gggtcttcaggaccaaaaggtatccctggtctccctggagactctggaataccaggagca
gatggtcgccctggtgttcctggaccaccaggtcccaaaggggaacctggcatcccaggt
ggtccagggtctcctggaattccaggattaaaaggcaatatgggagatatgggaattcca
ggacctccagggccaaaaggcacattgggtagtgtaggtaggccaggaaccccaggtcag
ccgggaattccaggcctccaagggcccaaaggtgaaccaggttcagctggccttggacca
ccaggacttaagggtcaaaagggtgagtcaggtcagccaggattcccaggaaatcaagga
cttaaaggaaacccaggacaacctggtctaccaggtttaccaggaatacccggggaaaag
ggtgatcttggccatccaggattccaaggtccccctggtcttcccggtcctaagggtctt
gatggaggacctggtgccccaggcctcatgggagctccaggtagaccaggggaacctggt
agagcagggccacctggactacttggagagaagggtcagccaggtcgagatggaatccca
ggaccagccggagttaaaggagaaccagggcttccaggttttggtggtcctggtccttca
ggtcttccagggccaccaggtgctaaaggagacataggccccccaggtcctgctggtagt
ccaggttttcctggtcctaaaggagacaacggccagcccggtggcccaggtcttccaggt
attactggccccccagggccttcaggacaacctctgcaaggtccaaaaggaggccaagga
cctcctggaccacctggaagatcaggaccacctggtccagagggtccccgtggactccca
ggaaatggtggtgttaaaggagagaagggtaatcccggcgctcccggccagcctggcttc
cctggtcagaaaggagattctggttttcaagggcctccgggcaaccctggaaatcctggt
gttcctggtatcaaaggagacaatggactaccgggcattcctggattccctggactaaag
ggagaaccaggactgcctggaccaagtggccttactggagatcctggcaacattggacaa
cctgggctccctggtgatcctgctattgctcccccttccttaagggtgaaaggagaaaga
ggacctcctggtccagctggcgtacctgggcctccaggaccacgtggtccacctggttct
ggtggacaatcaggcccaccgggtgaatctggagatcctggttctcctggtgctactggt
ttcaacggcccacctgggaggaagggagacactgggcccactggtccacctggccagcgt
ggtgacattggcccccgtggttcagatggtccacaaggtccccctggccctccagggtca
gtctcagcatcccacggtttcctcatcaccagacacagccagactgatgaactgccctca
tgtccaactgggactagctctatctatgaaggttactctttgctgtatgtgcagggcaac
gagagggcgcatggacaggaccttggcacagctggcagctgcctgagtcggttcagcccc
atgcctttcatgttctgtaacatcaacaacgtgtgcagctttgcctcccgtaatgactac
tcctattggctgtccacgccaaagcccatgcctatgtccatggaggcgatcactggagtg
agcatcgagccttacatcagcaggtgtagggtgtgtgaagctcctgctatggtgattgcc
gtccacagtcaaaccattcaaattcccacatgtcctgaaaactgggaacccctgtggatt
ggatactcatttatgatgcacaccagcgcaggtgcagaggggtccggtcaggctctggcc
tcccccggttcctgtctagaggagttccgcagcactcccttcattgagtgccacggcaga
gggtcgtgcaactatttcagcaactcctacagcttttggctggctactgtagaacgatca
gagatgttcaggaaaccccagtcggagaccttaaaggcgggcaacctacggtcacgcatt
agtcgttgtgtggtctgcatgaagaggacgtaa
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integrated database retrieval system
