Nothobranchius furzeri (turquoise killifish): 107377084
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Entry
107377084 CDS
T05163
Symbol
col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107377084 (col25a1)
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107377084 (col25a1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
107377084
NCBI-ProteinID:
XP_015801986
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Position
sgr04:complement(20924995..21178165)
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AA seq
676 aa
AA seq
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MEKEEAASLKERHRRAKVLNIISSLCSLASIAFCVHLSINAAQIQNRVVDLESGTGERTI
IPGPGYPMEDFNALIQQRVDELLAQHSYENFVKIRTARQTSPECNCPPGPPGKRGRRGRD
GEPGPPGPPGIKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPP
GPPGPPGPRGPPGDTGKDGPRGLPGLPGDSGQPGETGSMGPEGPQGPKGSFGPPGIPGVD
GLKGDMGIPGIDGIPGSKGDKGDQGEKGDMGEDGPKGDMGEKGDAGSSAAGIKGEPGEPG
RSGMKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGDHGPPGKGERGEIGP
VGPKGSQGEAGLPGLKGSKGETGDKGDLGFDGPKGPPGQKGDRGATEIIDYNGNIEEALQ
RITTITVTGPPGPPGPIGPQGIKGDRGLPGLPGLDGERGFKGSKGDMGMPGASGEKGTTG
LPGLPGVNGAKGDKGDAGLTGPQGPSIVGPPGPPGPHGPPGPMGPHGFPGPKGEPGLHGM
KGTRGEPGHKGDRGPLGLPGASGLDGKPGIRGMDGPPGPAGPAGPKGDIGERGAPGEAGP
RGPYGLPGAAGTPGLDGLPGLKGDKGDVGERGEKGEKGKKGKKGPKGEKGEQGAPGLDAP
CPLGPDGLPMPGCWQK
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagaagaagcggcttctctgaaggagcgacaccgccgcgcaaaagtgctgaac
ataatctcgtccctgtgctctctggcgtccatcgcgttctgcgtccatctgagcatcaac
gcggcccaaatccagaaccgagttgtggatctggagagcgggacgggagagcgcaccatc
atccccggacccggctaccccatggaggatttcaacgctctgattcagcagagagtggat
gagctgctggctcagcactcgtatgagaatttcgtcaagatccggactgcaagacaaacc
tcacctgaatgcaactgccccccaggacctcctggtaagcgaggaagaagaggacgtgat
ggagaacctggacctcctggcccccctggtataaaaggtgaaaagggggatcaaggtgac
cagggacctcggatggtcttcccaaagatcaatcatggctttctttccgctgaccagcag
ctcataaagcgtcggctcattaagggagatcagggccaagcaggaccacccggacctccg
gggccacccggtcctcctggaccaagaggtcctccaggggacaccgggaaggatggacct
agaggcctgccaggtctcccaggtgattcaggtcagcctggagaaacaggatccatgggg
cctgaggggccacaggggccaaagggatcttttgggcctcctggtattccaggtgttgat
ggacttaagggggatatgggcatcccaggaatagacggtatccccgggtccaagggtgac
aagggagatcagggtgaaaagggcgacatgggtgaggacggaccgaaaggtgacatgggg
gagaagggtgatgccggttcttctgcagcagggatcaagggtgagcctggagaacctgga
cgaagtggaatgaagggagagccaggactaccagggctgcctggactgccagggataaag
ggtgagcctgggtttcttggtccccagggagaaccagggctgccaggactcccaggaact
aagggcgagagaggtgaccatggaccaccaggaaagggtgaacgaggagaaattggacca
gttgggcctaagggttcacaaggagaggctggactgcctggcctcaaagggtcaaagggg
gagactggagataaaggagatctgggatttgatggtccaaagggtcctcctgggcagaaa
ggagacagaggagccaccgaaatcatcgactacaacggaaacatcgaagaggctttgcag
aggattaccactattacagtgacgggtcctccagggccgcctggaccaatcggacctcaa
ggaataaagggcgatcgtggtttgcctggtctccctggactggatggagagagaggattt
aaaggctccaaaggagacatgggaatgcccggggcctctggagagaaaggaaccaccggt
ttacctggtttacctggtgtaaatggggcaaagggagataaaggagatgcaggactaact
ggtcctcaaggtccatctattgtcggccctccagggcccccaggaccgcacgggcccccg
ggacctatgggaccgcatggctttcctggaccaaagggagaacctggtttacacggtatg
aagggaacgagaggggaaccgggacacaaaggggaccgtggaccgctgggcctccctgga
gcctccggcttggacggcaagcccggaattaggggtatggacgggcctccgggtccagct
ggtcctgctggtccgaagggtgacataggtgaacgtggagcaccaggtgaagccggaccg
aggggaccttatggactaccgggtgcagctggaacaccagggctggatgggttaccaggt
ctaaagggagataaaggcgacgttggggaaagaggagaaaagggggagaagggaaagaag
ggcaaaaaagggcctaagggcgagaaaggagaacagggtgccccaggattagatgcaccc
tgcccattgggcccagatggattaccaatgcctggctgttggcagaagtga
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