Nothobranchius furzeri (turquoise killifish): 107377193
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Entry
107377193 CDS
T05163
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nfu04147
]
107377193
00535 Proteoglycans [BR:
nfu00535
]
107377193
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107377193
Exosome [BR:
nfu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107377193
Proteoglycans [BR:
nfu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
107377193
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107377193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
107377193
NCBI-ProteinID:
XP_015802139
LinkDB
All DBs
Position
sgr04:25077328..25149832
Genome browser
AA seq
1611 aa
AA seq
DB search
MLEIQMWSLLLVLCAGSSQAWFFNLNPDPTTEVPAATTQEDATTVVDETAGEAKDGDNLS
NLGEEILSVATGIRKFVEDWSATTTAWTTSEGPTPKVEGAHPNMTDQSEENGVDLHQLIG
DPPPENIKKVFGLEYGHVSYKFTSAAALGQPALAHVPNPFYRDFSLMFYIKPTTPNASVL
FAITSSAQNLMYIGVKLSAVESGRQKVKFFYTEPGSESSYEAASFDVQSMLNRWTVFSLS
VADDQLTFYQGCYKKPQVVKFERSPDPMEIDLASRIFVGHGGTADPDKFEGLIAKLKLVG
DPRAVERFCEIEDDINEASGVSGEGSGETNQHEDNTVRATPQPSLVPKPIVIPSTDKSKV
TLKQLVGDPLPAGITLEGTSFYKFSSSGNVNQLALNHVPNPFYRIFSIVFRFQTSSANAA
VLFSITDSSQKLMLVGVKLGPIKSNRQKLQFFYTEPGSEASTEAASFDIPARQSMFYTLG
VTVFDDQVTLHMDCEKEPQVVKFQRSPDPMVLDPGARLFLGQAGKADPNKFEGKFSEFTL
EEGTQAFESFCDYNDYSNKELETVKVPVNDAGMTGSRGDKGDKGDKGERGPKGDQGPAGP
KGDSGSSSVSSSSSQSKEQGLKGEKGAKGDSGFGYAGSKGERGPQGPPGPPGPPGPAAEV
VKLAEGSVVHKVSGPPGPPGSPGPAGAPGPPGDDGEPGDPGEDGKSGPAGPQGAPGLPGT
SGTKGQKGERGEGPPGPRGPPGPPGPGTADRSTFVDMEGSGFPDLDKIRGPRGPPGPPGP
PGIPGTSVALGPDGPVAFGPPGPPGRDGAPGLPGRPGPPGPPGPPGPGGEKGDGGDLGLP
GPAGEKQAEVDSNPFDYLFSFFAPSSTGAQGDPGRTGTPGQTGLAGLPGPMGPVGPPGPP
GPPGPPYIIRDGSKLGNEVLNGLPGLRGPPGPQGPAGVPGLPGNPGFPGDHGIKGAEGPR
GPSGIPGVDGYPGPPGVKGDRGEKGETGLPGRDGGPPGPPGPPGPPGEVINSPTRDLEEV
YWNEVGKGGSGRSGFPGSVGQKGDKGDVGPPGYAPKGQKGEPGIIFGPDGKPLYLGGLAG
QPGEKGVPGPVGPPGPYGPPGLKGEIGLPGRPGRPGFNGAKGEKGDSGSGSGYGYPGPPG
PPGPPGPPGPPLSVDRIGGYDGYPRNYAEKGEKGDQGPPGMLEISGLGANFDLYTLKNEL
KGETGLKGEKGEPGGYYDPRYGGSAGGSPGVPGPPGPRGESIVGPPGPQGPPGSPGRGYD
GRPGPPGPPGPPGPSLSGPYRGTQTISIPGPPGPPGAPGLPGHSSGVMVLRTYESMAATA
RRQPEGSLVYVIDQTDLYLRVRDGVRQVQLGNYIPFPNAPGDELGAVEPPPIVPYSPEYN
RQPAQPDSQYPLQTDPRYPSYADRFNRPDGRYIDPRQPVTPPRRPPPPQAALHSHTSGPA
LHLIALNSPHSGAMRGNSGADFKCFSQAQAIGLKGTFRAFLSSKLQDIHSIVRRDDRENV
PIVNLKDEVLFDNWNAIFSDGRMKDNVSIYSFNGKDVVRDDTWPEKMVWHGSTNGGQRHL
DSFCESWRVSDRAVTGMATSLKSGSLTQQTSSSCSSSYVVLCVENSYIGHA
NT seq
4836 nt
NT seq
+upstream
nt +downstream
nt
atgctggagatccagatgtggtctcttctcctggttctctgtgctgggagttcgcaggcc
tggttcttcaatttgaatccagatcctacaacagaagtgccagcagcgacaacccaagaa
gatgctacaacggtcgtagacgagacggcaggagaagcgaaggatggagacaacttgtcc
aatctgggagaggagatcctcagtgtggccacggggatccgcaagtttgtggaggactgg
agcgctactacgaccgcctggactactagtgaaggcccgactccgaaagtggagggcgct
cacccaaacatgacggatcaatcagaggaaaatggcgtcgatttgcaccagttgattgga
gaccctccaccagaaaacatcaagaaggtttttggacttgagtacgggcacgtgtcctac
aagttcacctctgcagcagcattgggtcagcctgcattggcccatgtcccgaacccgttc
taccgagacttctccctcatgttctacatcaaacccacgactcccaacgcctccgtcctc
ttcgccatcaccagtagtgcccagaacctcatgtacattggcgtgaagctgagcgcggtt
gagtcaggtcgtcagaaggtcaagttcttctacaccgagcccggttcggagtcttcatat
gaagcggccagcttcgatgtgcagagcatgcttaacaggtggaccgttttttctctgtcg
gtggccgacgaccagctgactttttaccaggggtgttacaaaaaaccacaggtggtgaag
ttcgagcgctcaccggatccgatggagatcgacctggcgtctaggatatttgtgggccat
gggggaacagctgacccagacaaatttgagggtttgattgcgaagctgaagttggtggga
gatcctcgggcagtggagcgtttctgtgaaattgaggacgacatcaacgaagcctcaggt
gtttcaggtgaaggcagcggagaaaccaaccaacacgaagacaacactgttagggccact
cctcaacccagtctagtccccaagccaattgtgataccatcaacagataagagcaaagtg
actttgaagcagctggttggagacccgttacctgcagggatcacgttggagggaacatcc
ttctacaaattcagctcctctggaaatgtcaaccagctggccctcaatcatgtccccaac
cccttctaccgaatcttttccatcgtttttcggtttcagacctcctctgccaatgctgct
gtcctcttctccattacggactcctcccagaagctcatgctcgtcggtgtgaagctcggt
ccgataaagtccaaccgtcaaaaattgcagttcttttacactgagcctggctctgaggct
tcgactgaagcagccagctttgacataccggccaggcagtccatgttttataccttggga
gtgacggtgtttgacgatcaggtgactttgcacatggactgtgagaaggagccacaggtg
gtgaaatttcaacgctcgccagatccgatggtgctggacccaggggccaggttgtttttg
ggtcaggcaggaaaagccgacccaaacaaatttgaggggaagttctcagaattcacactg
gaggaaggtactcaggcgtttgagagtttctgtgactacaatgattacagcaataaagaa
ctggaaactgttaaagttccagtgaacgatgctggaatgacaggatccagaggcgataag
ggtgataagggtgataagggtgagagaggcccaaagggggaccaaggccccgcagggccg
aagggagattcaggttctagctcagtttctagttcctcctcacaaagtaaagaacaaggc
ctgaagggagaaaagggtgcaaagggggactctgggtttggatacgctgggtcaaaaggt
gaacgaggtcctcaggggcctcctggtcctcctggtcccccaggacctgcagctgaggtg
gtcaaacttgcagagggctctgttgtgcacaaggtgtctggacctcctggtcctccaggg
tcaccagggccggctggggccccaggacctccaggagatgacggggaacctggcgatcca
ggagaagacgggaaatctggtcctgctggaccacagggtgctccaggacttccaggaacc
tctggtaccaaaggccagaagggtgagcgaggagaaggtccacctggacccagaggcccc
cctggacctccaggacctggcaccgctgatcgttcaacatttgttgacatggagggctca
ggctttccagatctggataaaattcggggtcctcgtggtcccccaggtcctcctggccct
cctgggatccctggaacttcagtggcattgggacctgatggtccagtagcctttggacct
ccaggaccacctggacgagacggggctcctggactcccaggccgacccggtcctcctggc
ccacctggacctccaggacctggaggagaaaagggtgatggcggagatctcggacttcca
ggcccagctggagaaaagcaagctgaagtggactccaaccctttcgattacctcttctct
ttctttgctccatcctctacgggtgctcagggtgacccaggaaggacaggaacaccagga
cagactggtttggcagggctgccaggtcccatgggaccagttggacctccagggccccct
ggaccaccaggtccaccgtatatcatcagagatggtagcaagcttggaaatgaagtgcta
aatggtttacctggtctcagaggcccacctggacctcagggtccagcaggtgtcccaggg
ctacctggtaatccaggttttccaggtgatcatggaatcaagggagcagaaggaccacga
ggaccctctgggatcccaggagtggatggataccctggaccgccgggtgtgaaaggagac
agaggtgagaagggagagacgggtcttccaggccgagatggtgggccacctggtcctccg
gggcctcctggacctccaggagaggtcatcaacagtccaacaagagatcttgaagaggtt
tattggaacgaggttggaaaggggggatcaggtcgatccggattcccggggtcagtgggt
caaaagggagacaaaggagacgtgggtcctccaggatatgctccaaagggccagaagggc
gaacccgggatcatctttggacctgatggaaagcctttatatctgggaggtcttgcagga
cagcccggtgaaaagggggttccgggcccagttggacctccaggtccgtatggtccacct
ggattaaaaggagagatcggtcttccaggtagaccaggtcgaccgggatttaacggcgcc
aaaggagagaaaggggattcaggaagtggatctggatatggttaccctggtcccccaggt
ccaccgggacctcctggacctcctggtccacctttgtccgtggaccgaattggcgggtac
gatgggtacccgaggaattatgctgaaaaaggagagaagggcgatcagggaccaccaggg
atgcttgaaatttcaggtttgggggcaaactttgatttgtacactttaaagaatgagctg
aaaggtgagacgggtctgaaaggagagaaaggagaacctggaggatattatgacccccga
tatggagggagcgctggtggatccccgggagtacctggacctccaggcccgagaggagaa
tctattgtcggaccaccgggacctcaggggccacctggatctccaggaagaggctatgac
gggcgtccgggaccaccaggtcctcccggaccacctggcccatccttgtctgggccttac
agaggcacgcagactattagtattcctggacccccgggaccacctggagctccaggttta
cctggacattcttcaggggtgatggtgttgaggacctatgagagcatggcggccacagcc
agaagacaacctgaagggtcgctggtgtacgttatagaccaaacagacctctacctacga
gtcagagatggagttcgtcaagttcagcttgggaattacattccttttccaaatgcacct
ggtgatgagcttggagccgtggagccacctcccattgtcccgtactcaccagaatacaac
agacaaccggctcagcccgattcccaataccctcttcagacagatccaaggtatccaagt
tatgcagaccgcttcaaccgaccagacggtcgctacatagacccacggcagccagtcacg
cccccacgcagacctccacctcctcaggctgccctccacagccacacatcaggaccagcg
ctgcacctgatcgccctgaacagcccccactccggcgccatgcggggtaattccggcgct
gactttaagtgcttcagccaggctcaggccatcgggctgaaggggacgttccgagcattc
ctgtcttccaaactccaggacatccacagcatcgtccgcagggacgacagggaaaacgtg
ccaatagtgaacctgaaggatgaggttctgtttgataactggaacgccatcttcagcgat
ggcaggatgaaggacaacgtttctatctactccttcaatggaaaagacgttgtcagagac
gatacctggccggagaagatggtgtggcacgggtcgaccaatggaggtcagcgacacctc
gacagcttctgcgagtcgtggcgcgtgagcgatcgggcggtgacgggcatggccacgtcg
ctgaagagcggcagcctgacgcagcagacctccagcagctgctctagctcctacgtggtg
ctgtgtgtggagaacagctacatcggccacgcttaa
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integrated database retrieval system
