Nothobranchius furzeri (turquoise killifish): 107377625
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Entry
107377625 CDS
T05163
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107377625 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nfu03041
]
107377625 (cdc40)
Spliceosome [BR:
nfu03041
]
Complex C
Other components
Step II factors
107377625 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_Vps41
PQQ_2
Motif
Other DBs
NCBI-GeneID:
107377625
NCBI-ProteinID:
XP_015802849
UniProt:
A0A1A7Z929
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Position
sgr04:49893563..49915935
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AA seq
581 aa
AA seq
DB search
MSAAIASLASYGSDSDSENESESKPGTEKVAPVEPDATTHLKPLQPGYKTSLAVLNSAPE
VAVKESVETGIHLDPFLKEVTYNPTYETMFAPELGPQNPHRTQQMAAPRNMLSGYAEPAH
VSDFMFEQQRRTFSSFGYALDPSVDTHQVSSVSYIGAVDEAEKNKGMTVFESGQKKSEKR
KKVKGGDAGEIDGFLGPWAKYVDEKDVAKPTEEEKKELDEITAKRQKRGRNEEEAPSEEK
TILHVKDMYDYQGRSYLHVPQDVGINLRSADAPDKCYLPKKQIHVWSGHTMGVSAIRLFP
SSGHLLLSSSMDCKIKLWEVYNERRCLRTFIGHSKAVRDICFNNSGTQFLSAAYDRYLKL
WDSETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRTGEVVQEYDRHL
GAVNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLAC
QSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWK
TTKLYHRIKAHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgctatagcttccctcgcttcgtacggtagcgattccgactcagaaaatgag
tctgaatcaaagcctggtaccgagaaagttgccccggtggaaccggacgctacgacacac
cttaaacctttgcagcctggttacaaaacatctctagctgttctgaattcagccccggag
gtcgccgtgaaggagtctgtggagactggtattcacttggatccttttctcaaagaagtt
acttacaacccaacatatgaaaccatgtttgctccagagttgggaccgcagaaccctcat
aggacgcagcagatggcagctcccagaaacatgttatctggctatgcagaacctgctcac
gtcagcgattttatgtttgaacagcagaggaggaccttctcttcatttggttacgcttta
gatccttccgttgacacacaccaagtatcctctgttagctacattggtgcagtggatgag
gctgagaaaaataaagggatgactgtgtttgaaagtggtcagaaaaagtcagagaaaagg
aagaaggttaaaggtggtgatgcaggagagattgatggctttcttggaccgtgggcgaaa
tatgtggatgagaaagatgtggctaaaccaacagaggaagagaagaaagagcttgatgag
atcacagccaaaagacaaaagagaggaagaaatgaagaagaggctccttcagaggagaag
accattctccatgttaaagacatgtatgactaccagggcaggtcgtacctccacgtacca
caagatgtgggaatcaacttgcgttctgcggatgctccagataaatgttacctaccgaag
aaacaaattcacgtctggtccggacacaccatgggtgtcagtgctattcgattatttccc
agctctggccacctgctgctgtccagctccatggactgtaagatcaagttgtgggaggtg
tataatgaaaggaggtgtcttcgtacgtttatcggtcacagtaaagcagtacgagacatt
tgcttcaacaacagtggaacccagttcctgagcgccgcatatgaccgctaccttaaactg
tgggactcagagacaggccagtgtatttcccgcttcacaaacaggaaggtcccgtattgc
gtcaagttcaacccagacgaggacaaacagaatcttttcgtggctggcatgtcagataag
aagatcgttcagtgggacatccggacaggtgaggtggttcaggaatacgatcgtcatctg
ggtgccgtcaacacgatcacctttgtggacgagaatcgccggtttgtcagcacctcagat
gacaagagtcttcgagtttgggagtgggacatccctgtggactttaagtacatcgctgag
cccagtatgcactccatgccagctgtgactctgtctcccaatggtaaatggctggcatgc
cagtctatggacaaccagattctcatctttggagcccaaaaccgtttcagactgaacaaa
aagaaaatcttcaagggccacatggttgctggctacgcctgccaagtggatttctctcca
gacatgagctacgtggtgtcgggggatgcagatggaaagctaaacatttgggactggaag
accaccaagctctaccaccggatcaaagcccacgataaggtgtgcatcagcgctctgtgg
cacccacacgaaacctccaaggtcatcacctgtggctgggatggacagattaaactgtgg
gactaa
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