Nothobranchius furzeri (turquoise killifish): 107377720
Help
Entry
107377720 CDS
T05163
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107377720 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107377720 (cpsf2)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107377720 (cpsf2)
U7-dependent histone pre-mRNA processing factors
107377720 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
107377720
NCBI-ProteinID:
XP_015803001
UniProt:
A0A1A8V687
LinkDB
All DBs
Position
sgr04:complement(53990538..53997047)
Genome browser
AA seq
787 aa
AA seq
DB search
MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL
SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD
SAFDKIQQLKYSQIVSLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCTLESISRPSLLITDSFNATYVQPRRKQRDELLLTNVMETLRGDGNVLISVDTA
GRVLELAQLLDQIWRTKDAGLGVYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLTLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQNAKNSIILTYRTT
PGTLARYLIDNPGETMLDLEVRKRVKLEGKDLEEYLEKEKVKKEAAKKLEQAKEVDVDSS
DESDVEDDIDHLAAVKTKHHDLMMKSEGSRKGSFFKQAKKSYPMFPVHEERIKWDEYGEI
IRVEEFLVPELQATEEEKSKLESGLTNGDEPMDQDLSVVPTKCISSIENLEIRARIAYID
YEGRSDGDSIKKIINQMKPRQLVIVHGSPEASQDLAESCKAFSKDIKVYTPKLQETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDTGVMLEEGVKEEAEDSD
MPVDIAPDLDIDHDATAVAAQRAMKNLFGEDEKEVSEESDVIPTLEPLPLSEISGHQSVF
INEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEPGRIGLEGCLCDDYFKIRELL
YQQYAVV
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccattatcaagctgacagccgtgtcaggggttcaggaggagtctgccctctgt
tacctgctgcaggtggatgaatttcgcttcctgctggactgtggatgggacgagaacttt
tcaatggacattattgatgccatgaagcgatatgttcatcaggtcgatgcagtgctgctg
tcccaccctgaccccattcacctgggagccctgccctatgctgttggcaagctgggtcta
aactgtactatctatgccaccattccggtctacaaaatgggtcagatgttcatgtatgat
ttatatcagtctcgaaacaacagtgaagatttcacgctcttcacccttgatgacgtagac
agtgcttttgacaaaatccagcaactgaagtactctcagattgtcagtctgaaaggtaaa
ggccatggcctttccatcactcctcttcctgctggacacatgatcggaggcaccatatgg
aagattgtcaaggatggagaggaggaaattgtctatgcagtggactttaaccataagaga
gaaatccacctgaatggctgcactttggagagcattagtcgtccatccttactgattact
gactcctttaatgctacttatgtacaaccacgccgcaagcaaagagatgagctgctgctc
actaatgtaatggagaccttgcgtggggatgggaatgtccttatttccgtggacacggct
ggacgcgtcctggagctggcacagctcctggaccagatttggaggacaaaggatgctgga
ctgggagtttacccgttagctctgctcaacaatgtcagttacaatgtggtggaattctcc
aagtcccaggtggagtggatgagcgacaaactcatgaggtgttttgaggataaaagaaac
aatcccttccagttccgacacctgaccctgtgtcacagtctggcagacctggcccgggtc
cccagccccaaggtggtgctttgtagccagccagaccttgagtctggtttttccagagaa
ctttttattcagtggtgtcaaaacgcaaaaaattccatcatcctgacctaccgcaccaca
cctggaacgttggcgcgctacctcatcgacaaccctggggaaacgatgctggatctggag
gtcaggaaaagagtgaagctcgagggcaaggacctggaggaatatctggagaaggagaaa
gtgaagaaggaagcagcaaaaaaactcgaacaagcaaaagaggtggatgtggactcgagt
gatgagagcgacgtggaggatgacatcgatcacctagctgcggtgaaaaccaagcatcac
gacttgatgatgaagagcgaggggagccgtaaaggcagtttcttcaaacaggctaaaaag
tcttacccgatgtttccggtacacgaggagaggattaaatgggacgaatatggagagatc
atcagggtagaagagttcctggttcctgaacttcaagccacagaggaggagaagagcaaa
ctggagtcgggtctgactaacggggatgagcccatggaccaggatctgtctgtcgttccc
accaaatgcatctcaagtatagaaaatctggagataagagccaggattgcatatatcgac
tacgaaggtcgctctgatggcgactccataaagaaaataattaaccagatgaagcccagg
cagctcgtcattgttcacggctcaccagaagccagccaggacctggctgagtcctgcaag
gctttcagcaaagacattaaagtctacacacccaagctgcaggaaactgtggacgccacc
agtgaaacacacatctaccaggtgcgtttgaaagactcgttggtgagctcgctgcagttc
tgcaaggccaaagacacggagctggcgtggatcgacggcgtgcttgacatgcgtgtagtg
aaggtggacaccggcgtgatgctggaggagggtgttaaagaagaggcggaggacagcgac
atgccagtggacatcgcccccgatcttgacatcgatcatgacgccacggcggtggcagct
cagcgcgccatgaagaacctgtttggagaggatgagaaggaggtgtcggaggagagtgat
gtcattcccacgcttgagccgctgcctctgagcgagatttcagggcatcagtctgtgttc
atcaacgagccgcggctgtccgacttcaagcaggtcctgctcagagagggcatccaggct
gagttcgtgggtggagtcctggtgtgtaacaacatggtggccgtccgcaggactgagccg
ggacggatcggactggaaggctgcctgtgtgacgactactttaagatccgggagctgcta
tatcagcagtacgcagttgtgtag
DBGET
integrated database retrieval system
