Nothobranchius furzeri (turquoise killifish): 107377928
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Entry
107377928 CDS
T05163
Symbol
taf1b
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B isoform X1
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nfu03021
]
107377928 (taf1b)
Transcription machinery [BR:
nfu03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
107377928 (taf1b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Rrn7_cyclin_N
Zn_ribbon_RRN7
DUF5816
Motif
Other DBs
NCBI-GeneID:
107377928
NCBI-ProteinID:
XP_015803371
UniProt:
A0A1A8TZ61
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All DBs
Position
sgr04:61437833..61446028
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AA seq
562 aa
AA seq
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MDEDATAGYREPCAQCAAVNWGISEEGRFYCMSCHNVIERTIEVVDLSVAGSSNRLKSIA
KGPRTSKEERGYTWLVCEGFQFILKNQADALLRLGVDPNFKEVLCQMWRLYLQKSQQAYT
SDRLRGSRFRPLNIDSDSDCATESSIVSERESNPSSFSEIDSDCSGSADERTPRRRNRLM
RMRKTLALVHLALVWSREALTLSDLLRLVRDGHVPYLNAYEQFPEEMKLSGNKSSVFNTK
SIPSHRLVHKVAQSLVLVLELPAFPPIGPENLLHPAMLSMRYLADANLPDGLHRWVCSLM
ERPQKSKRDPSPALPRHDVQAAAHIIVTMKLIFGLDDHTEWELSNKVTPHDPSENLFSFR
RWFRLMGTALGRAEQKRDRDMARKQWKPKKPIILRRRLAGRAMKTKRISEQLQMCFEKLS
SSPAGVQDVGLSSFRFCWGDEDGSNGPSLHHMKLDGVLSLEDDVLTPLNSSYWHPGLRRC
KLMHCQGSAPGHYPEFEPSLPRSFVWVLRLFSFLLDVEPCYLFQEVLEVERRLVGSRLPG
QRNKRRLRNRTGKEEEQQEERS
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagacgctacggctggctacagggagccctgcgctcagtgtgcagcggtgaac
tggggcatctcagaagaaggtcgtttctactgcatgtcctgccacaacgtcatagagagg
accatagaggtggtggacctgagcgtcgctggaagctccaacagattaaaatctatcgcc
aaaggacccagaaccagtaaagaagagcgcggctacacctggctggtctgtgaggggttc
cagttcatcctgaagaaccaggctgacgctctgctccggctgggagtcgatccgaacttt
aaggaggttttgtgtcagatgtggagactttacctgcagaagagccagcaggcgtacacc
tccgatcggctgcgtgggtccaggttcagaccgctcaacatcgactcagactctgactgc
gccaccgagtcgtccatcgtgtcggagagagagtcgaacccgtccagtttctcagagatc
gacagcgattgctccggttccgccgacgagagaaccccacggaggaggaaccgcttgatg
agaatgaggaagactctggctctggttcacctagcgttggtgtggagccgcgaggctctg
acgctcagcgacctgctcaggctggtcagagacggccacgtcccatacctgaacgcctac
gagcagtttcctgaagagatgaagctgagtggaaacaaatccagtgtcttcaacaccaag
agcatcccgtctcaccgcctggtccataaagtggctcagagtctggttctggtcctggag
cttcctgcttttcctcccatcggcccagagaatctgctccacccggcgatgctcagcatg
cgttacctagctgatgccaacctgcccgatgggctgcaccggtgggtctgcagcctgatg
gagcgcccacagaagtctaaacgggatccgagtccggcgttgccacggcacgacgttcag
gccgctgcccacatcatcgtcaccatgaagctgatcttcggtctagacgaccataccgaa
tgggaattatccaacaaagtgaccccgcatgacccctctgaaaacctgttcagcttcagg
aggtggttccggctgatggggacggctctgggccgagccgagcagaagcgggaccgggat
atggccaggaagcagtggaagccaaagaaaccgattatcctacgtaggaggctggcgggc
cgcgcgatgaagacaaaaagaatctctgagcagctgcaaatgtgcttcgagaagctgtcc
tccagtcctgcaggtgtccaggatgtcggtctgtccagcttcaggttctgctggggggac
gaggacgggtccaacggtcccagtctgcatcacatgaagctggatggagtcctgagcctg
gaggacgatgtcctgactccccttaactcctcctactggcatccaggcctcagacgctgc
aaactgatgcactgccaaggatcggccccgggtcattaccccgagttcgagccatcactg
ccgcggtccttcgtctgggtgctgcggctcttcagcttcctgctggacgtggaaccatgt
tacctgtttcaggaggtgctggaggtggagaggaggctggtcggatccaggttaccaggg
caacgaaacaaaaggaggctcaggaacaggacaggaaaggaagaggagcagcaggaagag
aggagctga
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