Nothobranchius furzeri (turquoise killifish): 107377936
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Entry
107377936 CDS
T05163
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107377936 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nfu03000
]
107377936 (arid1b)
03021 Transcription machinery [BR:
nfu03021
]
107377936 (arid1b)
03036 Chromosome and associated proteins [BR:
nfu03036
]
107377936 (arid1b)
Transcription factors [BR:
nfu03000
]
Eukaryotic type
Helix-turn-helix
ARID
107377936 (arid1b)
Transcription machinery [BR:
nfu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
107377936 (arid1b)
Chromosome and associated proteins [BR:
nfu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
107377936 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
107377936
NCBI-ProteinID:
XP_015803382
UniProt:
A0A1A8AW94
LinkDB
All DBs
Position
sgr04:complement(61493653..61518005)
Genome browser
AA seq
1904 aa
AA seq
DB search
MDASVGAATSNTINNHPPPTGTSSDFNHYYENGRGGPSSDQHGGQQSSGTGVTVARTVHG
TMDQVHNSHEGFSNSSPYNHYPDYRAGYGASGYVGMTSPSRQGSRPMGPGSKAAMTATSS
SAGGGGGAAGFQRLPGQGQQHPSGATPTLNQLLTSPSPMIRGYGGGYPDYSSPAEETGSQ
YGSAAQVWGTQRSHPSSVSPGNNGPSSGRSQVSPMDPTVMKRSQLYGTSNPPYNQQQGPP
YSGQPYGSSFPRGYQLGMSSRGQAVMGGVQYPQQQMGSQYSQQQNLSSYSQPPYFSPPQQ
QTAAPSQTLYMQPRPLPPQEVPQEAYGGRGKSAAMTLGKPNHEDVSLSQQERPSSLPDLS
GSIDDLPTGTEAAVSSGTSGDQGTPGARLPFSPHVSPRLPPSRTGLSPSPSLSPAGSNQS
RSGPLSPPTSSRPGSHLTAQVSGPGSDVGPQSSQSTMTPDRGFPPSMQRSTQFGAQPSAH
PMSSQPAPSGPMHHGPYQQGSHSYGQYGPPGNYPRPPHYGGTPGASYSGPGPGPGLANSL
GPNATSPMHGQGPSTPAGRGLGAGGRSNPIGAGTMSPTSPSMPQAAGQGMGSLGPSTSSN
PEMVPNAGISTNSSSPSVSAAQSWQGSFPGVTLMGGPYGQHLGPPFSAPGVRMMPADGFR
PHGDARHRVEFSKENVGLGSDPLRAKDSYRSQCVSQHPTTPCPMSPSSASMSSFVGEDSN
SISSPSWLQTPPSPKPSVATMTNEKVTRLYEMGPEPERRLWVDRYLSFMEERGTPVPNLP
TVGKKPLDLCRLYLAVREIGGLAMVNKNKKWRELSTLLNVGTSSTSASSLKKQYIQYLFA
YESKVERGEEPPLDTTATTKKPSSLQAKIQPPSPVNSASLQGPNTPQSSSSSLTEAPVDL
KPSTPTSTPHSQMGPHSGNRSLGGVSIQDPFSEGNDPAFHSRRGPEPGGGPAEPAMRLQY
EANCGGSRKGPVLGETFGPGHLPSGTMQDMYTSGPVTGVGSKPQYPYGPGYERRVDHVTG
PHRGVAPPGGQNCMGSSGTEPGLFASNRYPPHQRPGGPDGYQYPHSMAYSSHQPLYPHQQ
GYKRPMEGLYPPPKRHEGEAFGVPAPYGAGGGAYMSPERRPVQGQFPYRQGAPQHSMMGS
GPSGGPGEGPQSNMWPPRTDMSYSYSRQSQGPPCEHEGRPSQDTQWPPSPHSQHQPPLPT
LPSRQPPSTFQATPTIQNHVTLSHSPSPFPRPSGGSLSPNSSPYLSSIKKPGAPTGPPPP
QGLPLIYRDVSYPPSSVEATPPKLKPRRRLTAKDTGTPEAWRVMMSLKSGLLAESTWALD
TINILLYDNGTVGSFNLLQLPGFLELVVEFYRRCLIQIFGILEEYEVGAESQKSLLGPVP
EKEELKEVTTASQPETKLEEAPPCSALEKEMKDTKPVLGVKEEQMELRPQQSSKFDKLPV
RVEEMGETWEEVEERWTRLSRPNGFISGLLHWKAGGGDSTAHIQTHFESRTGNFAPPDPL
ERWRGEETRGRTGGGEGRSPEGEGVEKDGLLEEQGGDHLVLIGSAQNPTAALTRVCLCST
GRQSEVRGQRSSPISHQEDEPRCWDEAPLSTAESWQDSLTKRCICISNIIRNLSFVPGND
AILSRHPGLVLILGRLVLLHHLHPPRKGMRPSYQREEEQGRACSRDEWWWDCLTALRENT
LVTLANMSGQLDLSQYPESICLPILDGLLHWMVCPSAEALDPFSSAGGLSSLTPQRLVLE
CLCKLSIQDCNVDLLLATPPFSRQQRLFSSLVRLVGERKNQVCREMAVAVLSNLARGEPA
AARAIALQRGSVGTLIGFLEDSVAMAQYQQNPHSLLHATLPPEPPSINMMCRTAKALLAM
ASVEENRTEFVLYESRLLDISLSAALSPTVAAIMCEVLFKLSRS
NT seq
5715 nt
NT seq
+upstream
nt +downstream
nt
atggatgccagcgtgggagcagccaccagcaacactatcaacaaccaccctcctccgact
gggaccagctccgactttaatcattattatgagaatggaagaggagggcccagctctgat
caacatggcggacaacaaagctcagggactggggtaacagttgctcgaacggtacacgga
accatggaccaggtccacaactcccacgaaggcttcagcaacagcagcccgtacaaccac
tacccggactaccgagccggatacggggccagcggctacgtgggcatgacgagcccctcc
cggcagggcagcagaccgatgggcccgggtagcaaagcggctatgactgctaccagctcc
tcggctggaggcggaggaggcgccgcagggttccagcggttacccggacagggtcagcag
cacccatcaggggctacgccgactttaaaccagttattaacatctccgagcccgatgatt
cgcggctatggaggggggtacccagactacagtagtcctgcggaagagacgggctcccag
tacgggtcagcagctcaagtctggggaacccaaaggagtcacccttcgagcgtcagcccg
gggaacaacggaccgagcagcggtagatcccaggtgtcgccaatggacccaacggtgatg
aagcgctctcagctctatgggacaagtaaccctccctacaaccagcagcaggggccgccg
tactccggtcagccgtacggatcctcttttccccgagggtaccagctggggatgtccagt
agggggcaggcagtgatggggggggtgcagtacccccaacagcagatgggctctcagtac
agccagcagcagaacctgagcagttacagtcagccgccgtacttcagccccccgcagcag
caaaccgccgcccccagccagacgctctacatgcagccccgcccactgcctccacaggaa
gttcctcaggaagcgtacggggggcggggcaagtctgctgctatgactcttgggaagccg
aaccatgaggacgtgagtctgagccaacaggagagaccgtccagcctgccggatctgtcg
ggctccatcgacgacctgcccaccggtacggaggccgccgtcagttcagggacctcgggg
gaccaggggactccaggggcccgcctgcctttctccccccacgtctctccccgcctccct
ccttctcgtacaggactgtccccctccccatcactgtctcctgccgggagcaaccaatca
cggtcagggccgttgtccccccccacgtccagcaggccagggtctcacttgaccgctcag
gtctctggtcctggatcagatgtgggtcctcagtcctctcagtcaaccatgacccctgac
agaggtttccctccctccatgcagcgctccacccagtttggtgcccagccttcagcccac
cccatgtcctcccagcctgctccatcggggccgatgcatcacggcccctaccagcagggg
agccactcctacggccagtacggtcccccaggtaactaccctcggcccccccattatggt
gggactccaggtgccagctacagcgggcccggcccagggcccggcctcgccaacagcctg
gggccaaacgccaccagtccgatgcacggtcagggcccctccactcctgcaggtcggggc
ctcggggccgggggccgctccaaccccatcggagcaggcaccatgtcccccacatctccc
agcatgcctcaggccgcggggcaaggcatggggtccctggggcccagcaccagcagcaac
ccagagatggtccccaacgctggaataagcaccaactcctcatcgccgtccgtgagcgcc
gcccagagctggcagggcagcttcccaggcgtgaccctgatgggaggtccgtacggccag
cacctgggcccccctttctccgctccaggtgtaaggatgatgccggcagacgggttcaga
cctcatggagacgccagacatcgggtcgagttcagtaaagagaacgttgggctcggttct
gatcccctcagagccaaggacagctacaggtctcagtgtgtgtctcaacaccccaccacc
ccatgtcccatgtctcccagctcagccagtatgtcctcctttgtgggggaggacagcaac
agcattagcagcccctcctggctccagactccgcccagccctaagcccagcgtggccacc
atgaccaacgagaaggtcactcggctctatgagatgggccctgaaccagagaggaggctg
tgggtggaccggtacctgtccttcatggaggagagggggacacctgtcccgaacttgccc
actgtgggaaagaagcctctggacctctgcagactgtacctggctgtcagagagatcgga
ggactggccatggtaaacaaaaacaagaagtggcgtgagctgtcgaccctcctgaacgtg
gggacatccagcacctctgccagctctctgaagaaacagtacatccagtacctgttcgcc
tacgagagcaaggtggagcggggggaggagcctccgctcgacaccacggcgaccacaaag
aaaccgtcatccctccaggccaagatccagcctccatctccagtcaactcggcctcccta
cagggcccgaacacccctcagtccagcagcagctccctcactgaggcacccgtagacctg
aagccctcgacccccacctccacaccacacagtcagatgggtccccactccggaaacagg
agcctggggggggtgagcatccaggacccgttttccgaaggcaacgatccggccttccac
agcaggcggggcccggagcccggcgggggcccagcagaaccagcgatgaggctgcagtat
gaagccaactgtggaggctcgaggaagggtccggttctcggggagacctttggtcctggt
catttaccaagcggcaccatgcaggacatgtacacctctgggcctgtaacaggggtgggg
tccaaaccacagtacccttatgggcccggctatgagcggagagtagaccatgtgacgggt
ccgcacagaggcgtggcaccccctggaggtcagaactgcatgggttcatctggaaccgag
ccgggcctgttcgcgtctaacagataccccccccaccagaggcccggcggacctgatggg
taccagtatcctcacagcatggcctacagttcccatcagcctctgtacccccaccagcag
ggctacaagcgtccaatggagggtctgtaccccccccctaagcgccatgagggagaggcc
tttggagtgcccgccccgtatggagcaggaggcggagcctacatgagccctgagcgccga
cccgttcagggacagtttccttatcgtcagggggccccccagcacagtatgatgggttca
ggaccatcggggggcccgggggaggggcctcagtccaacatgtggccccccaggacggac
atgagttactcatacagccggcagagccaggggcccccctgcgagcacgagggccgcccc
tcccaggacacgcagtggccccccagtccccacagtcagcaccagccccccttacccaca
ctaccctccaggcagcccccctccacattccaggccacgcccacaatccaaaatcatgtc
accctctctcacagcccctccccttttccccggccatcagggggctctctgtcccccaac
agctccccctacctgtcttccatcaagaagcctggggctccaaccgggcccccaccccct
cagggcctccccctcatctacagagatgtcagctacccccccagttctgtggaggccacg
ccccctaaactgaaaccacggcgacgcctgacagccaaggacacaggaaccccagaggcg
tggcgagtgatgatgtcactgaagtctgggcttttagcagagagcacgtgggcgctggac
accatcaacatcctgctgtacgacaatgggacagtaggctctttcaaccttctgcagctg
ccgggtttcctggaacttgttgtggagttttaccgccgctgcctcatccagatctttggc
atcctggaggagtacgaggtgggggctgagagccagaagagcctgctggggcccgttccc
gagaaggaggagctcaaggaggtaacgactgcctctcaacctgaaaccaagctggaggag
gcacctccatgcagtgctctcgagaaggagatgaaagacaccaaacctgtcctaggggtg
aaggaggagcagatggagctccgccctcaacagagcagcaaatttgacaagctgccagtc
agagtggaggagatgggggagacatgggaggaggtggaggaacgctggaccagactgagc
cgacccaacggcttcatcagtggcctcctgcactggaaggcaggaggaggagactccacg
gctcatatccagacccactttgagtcccgcactggaaactttgctcctccagatccactg
gagaggtggaggggcgaggagaccagggggaggacaggaggaggtgagggtaggagccca
gagggcgagggagttgagaaggacggcttgctagaagaacaaggaggtgatcatctggtc
ctgattggatctgcccagaacccgacagcagctctgactcgagtgtgtttgtgctctaca
ggccggcagtctgaggtcagaggtcaaaggtcaagtcccattagccaccaggaggatgag
cctcgatgctgggacgaggcgccgctctccaccgccgagtcctggcaggactccctgacc
aaacgctgcatctgcatctccaacatcatacggaacctgtccttcgtccctggtaatgac
gccatcttgtctcgacacccgggcctggttctgattctgggccggctggtgcttctgcac
cacctccacccccccaggaaagggatgcgtccctcgtaccagcgagaggaggagcagggt
cgggcctgcagccgggacgagtggtggtgggactgcctgacggcgctgagggagaacact
ctggtgaccctggccaacatgtcgggtcaactggacctgtcccagtacccggagagtatc
tgcctgcccatcctggacgggctgctgcactggatggtgtgtccgtcggccgaggccctg
gacccgttctcctcggcgggcggcttgtcatcgctcacgcctcagaggctggttctggag
tgtctgtgtaagctgagcatccaggactgtaacgtggacctgctgcttgccacgccgccc
ttcagccgccagcagaggctcttctcctctctggtccggcttgtgggcgagcggaagaat
caggtgtgtcgggagatggcggtggccgtactgtccaacctggcacggggcgagccagcg
gcggctagggccatcgccctgcagagaggcagcgtgggaactcttatcggcttcctggag
gacagcgtggccatggcccagtaccagcagaacccgcacagcctgctgcacgccacgctg
ccgccggagccgcccagcatcaacatgatgtgccgcacggccaaggcgctgctggccatg
gcgagcgtggaggagaaccggaccgagtttgttctgtacgagagccggctgctggacatc
tcgctgtcggccgcgctcagcccaacggtggcggccatcatgtgtgaagttctgttcaaa
ctcagccgctcatga
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integrated database retrieval system
