Nothobranchius furzeri (turquoise killifish): 107378337
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Entry
107378337 CDS
T05163
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107378337 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107378337 (xab2)
03041 Spliceosome [BR:
nfu03041
]
107378337 (xab2)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107378337 (xab2)
Spliceosome [BR:
nfu03041
]
Complex B
Other components
Prp19-related factors
107378337 (xab2)
Complex C
107378337 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_19
TPR_12
TPR_2
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
TPR_MalT
SNAP
NRDE-2
Tcf25
DUF3987
TPR_1
Motif
Other DBs
NCBI-GeneID:
107378337
NCBI-ProteinID:
XP_015803968
UniProt:
A0A1A8VBU3
LinkDB
All DBs
Position
sgr05:2649552..2661021
Genome browser
AA seq
847 aa
AA seq
DB search
MPSINGKADVIFEDDDLPYEEEIIRNPYSVKCWMRYLEFKQNGPKATLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPTYEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRRTLDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYID
YLKSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQEEEDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGNPRQIINTYTEAVQTVDSMKATGKPHSLWVSFAKFYEENDQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSKKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETEERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRGRAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQMGIDDMKMLEQKAKQLAAEAEQ
DKPKPKEKILFVRSDTTRSELAELAKQANPDEINIDEDDEDEDQGPEEVQLEQKSVPTAV
FGGLKDD
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgccttccataaatggaaaagcggatgttatctttgaggatgacgaccttccttatgaa
gaggagattatcaggaacccgtactcggtcaagtgttggatgcgttaccttgaattcaaa
cagaatggacccaaagccaccctcaacatgatatatgagcgcgctttgaaggaactacct
ggaagctataaactgtggtacaattacctgagagagagaaggaaacaagtcaaagggaaa
tgtataactgagcccacgtatgaagaggtcaataattgtcatgaaagggcactggtgttc
atgcacaagatgcctaggatatggcttgattactgccagttcctcgtgtcccagtgcaag
attactagaagtcgacggacacttgaccgtgcactgagagccctgcctgttactcagcat
ccacgcatctggccattatatcttcgctttgtccgtaacctgcctctacctgagacagcc
atccgggtctatcggaggtacctcaagctctctccagagaatgcagaagaatacattgac
tacttaaagtctgttggtcgcttggatgaagcagcagtgcgactagcagcagttgttaat
gatgaaagttttgtgtccaaagagggcaagtccaactatcagctgtggcatgagctatgt
gacctgatctctcagaatcctgataaagtgacctctctaaatgttggagccatcatacgt
ggaggtctcacacgcttcacagaccaacttggaaagctttggtgctctttagctgactat
tacattcgaagtggccactttgagaaagcaagggatgtgtatgaggaagccatcctcaca
gtggtaacagtcagggatttcacacaagtgtttgacagctatgcccaatttgaggagagc
atgattgctgcaaaaatggagactaccgccgagatgggtcaggaggaggaagatgacata
gacttggagctcagattggcgcgctttgagcagctgatagctcggcgtcctcttctgctg
aacagtgtacttttgaggcagaacccacataatgttcatgagtggcacaagcgagtgaaa
ctctatgacggaaacccgcggcagatcatcaacacgtacacagaagctgttcagacagtg
gattcaatgaaggctactggaaagcctcactctctctgggtttcttttgcaaaattctat
gaggaaaatgatcaactagatgatgctagaacgatctttgagaaggctaccaaagtgaac
tacaagcaggtagatgacctagctgcagtctggtgtgaatatggagaaatggagcttcgc
cacgagaactatgatcaggcactacgcatactgaggaaagctacagccatcccatcaaag
aaggcagagtactttgattcgtctgagcccgtccaaaaccgagtctacaaatccttgaag
gtttggtctatgctggcagacttggaggagagtcttggcactttccagtctacaaaagca
gtatatgaccgtattattgatctacgcattgccactccacaaatcatcatcaactatgcc
atgttccttgaagaacacaactactttgaagaaagctttaaggcgtacgagcgagggatt
gctctcttcaagtggccaaatgtttatgacatctggaacacctatctcaccaagttcatt
gatcgttatggaggaaagaagttggagagagctcgagatttatttgaacaagccctggat
ggctgccctgccaaatttgccaagaccatttatttgttgtacgccaaactggaagaggag
tatggattggctcggcacgccatggctgtctatgaaagagccacgcaggctgtggaaaca
gaagagagacaccacatgtttaatatctacattaaaagggcagctgaaatttatggtgtt
acgtataccagagccatttaccagaaggccattgaggtccttcctgatgagcatgcaagg
gatatgtgcctgcgatttgctgacatggagagcaaacttggtgagattgatcggggcaga
gccatctactcctactgctctcagatctgtgacccaagggtgacagctaatttctggcag
acctggaaagagtttgagatccgtcatggaaatgaagacaccattagagagatgttgagg
atcaaacgcagtgttcaggccacctacaacacccaggtcaattttatgtcatctcagatg
ctgaaagctaccaccagctccactggcactgtttccgatcttgcgcctggccagatggga
atagatgacatgaaaatgttggagcagaaagcaaagcaacttgctgctgaggctgagcaa
gacaaaccaaaacccaaggagaagattctatttgtcagaagtgacacaacgcgcagtgag
ttagctgagctcgccaaacaagccaatcctgatgagataaacattgacgaggatgacgag
gatgaggatcaaggaccagaagaggtacaacttgagcagaagagtgtgccaacagcagtt
tttggaggactgaaggacgactga
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