Nothobranchius furzeri (turquoise killifish): 107378343
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Entry
107378343 CDS
T05163
Name
(RefSeq) collagen alpha-1(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107378343
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107378343
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107378343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Vfa1
Motif
Other DBs
NCBI-GeneID:
107378343
NCBI-ProteinID:
XP_015803978
UniProt:
A0A1A8AGJ1
LinkDB
All DBs
Position
sgr05:2822670..2872840
Genome browser
AA seq
1864 aa
AA seq
DB search
MDSLTRTRLRRRTHLFIFILIHLTTAQNADPIDVLRVLGLSENMEGVSLEAGLCTSRRGT
EEMDLAYKIKKIQLSAPTKQLFPESNFPEDFSLMTTVRAKKGSQSFLLSVYDDQGVQQLG
LEVGRSPVFLYEDQHGQPTPELYPIFKKINLADGKWHRVAFSVQDKTVSLYLDCEKVETL
DLLRGDDVAVSTDGVTVFGTRLLDEEVFEGDIQQLLIVEDPQAAANYCINHIPDCDFALP
YNSQALDQQELSQLEFDASVQSDQPAEEKKEPKEERNRKKNKKKRDKSSKGKRKGKGKKG
SRKKKHEDEGLEEGFLRTPTAAPEFQSQKPFQPTGLPDVETTFNVFSTQVLDRTTTELLT
LKPDFTTEAPSVVPSTLPVSKLAKEESTPLEKAVVAEYDDGLFAHLYEDLSVSTVTVGPN
VTEYEILEYEDLKNDTESEYEEYEIYEDGFDFAERERAETLNVEAALRAEKGQKGEQAII
EPGLLVIGPQGLPGPEGLPGPAGPTGPPGPRGDPGDLGPPGRPGLAGVDGIPGPPGTILM
IPFHYGGDSQKGPVVSAQEAQAHAILQQSKMSLMGPPGPLGLTGRPGPMGVPGPAGLKGD
QGENGPPGPRGLPGPHGINGKPGKRGHAGVDGGRGSPGETGAKGDRGFDGLPGLPGNKGH
LGDRGRPGPQGPIGEPGEKGSDGPVGPRGQAGEPGPRGLVGPRGPPGSPGQPGIAGTDGV
QGSKGNQGPHGEIGPPGQQGNPGIQGFHGPQGPIGAPGEKGPPGKQGMQGLPGIDGPPGH
PGREGPPGEKGIQGLPGTQGPVGYPGIRGVKGADGVRGLKGSKGEKGEDGFPGPKGDMGV
KGDRGENGAVGSRGEDGPEGPKGQTGPVGESGQVGAAGEKGKLGVPGLPGYPGRQGPKGT
LGFPGVAGILGEKGRRGASGQPGPGGQRGPNGARGGRGARGPTGKPGEKGSAGQDGPPGS
PGDQGPQGAQGQSGEPGPKGPNGPSGKDGLPGHPGQRGEPGFQGKNGPPGPPGVVGPQGK
SGETGPTGDRGHPGSPGPPGEHGLPGAAGKEGAKGDPGPLGVAGKSGPPGLKGFRGSRGT
PGVTGPPGLKGGEGLPGTAGTIGATGERGPAGPAGAIGPPGRPGSIGPAGPNGEKGEPGE
KGTLGPAGHDGQPGPTGLPGVAGSPGPPGEDGDKGELGTPGQKGSKGDKGEAGPPGPVGI
QGPVGQPGPSGADGEPGLRGQMGVNGAKGDEGPRGFKGPPGPSGLQGMPGPPGEKGESGH
VGSMGPPGQHGPRGPQGAIGAEGSLGSPGGVGQPGRVGEKGEDGEAGDPGPVGESGLPGA
KGDVGEKGDSGPPGAAGPPGSRGTPGEDGSKGNLGPIGFPGDLGPPGELGTSGVDGAPGA
KGDDGEPGKAGPPGASGEPGPTGAPGRRGHIGAAGKEGKQGVKGGKGATGAQGPVGKTGP
VGPQGPPGRPGPEGLHGIPGPAGEQGLNGPPGQTGPPGPLGPPGLPGLKGDPGNKGEKGH
GGLIGLIGPPGEPGEKGDRGLPGSQGLQGAKGDEGMLGSLGPIGPPGPPGLSGPAGEKGS
KGESGVTGPIGDPGPAGLPGPPGPPATFVQPLPIWEERRKRRRHSDQATGAAPTREDEEA
FLQGDQPLEDAEGMEEVFATLSSMKNDVELIRKPLGTFDSPARTCKELMMIQPDYKDGDY
WIDPNQGCHRDSIKVFCNFTAYGETCLYPDKRIELVKLSAWAKEKPGSWFSQYKKGKQFS
YTDRDGNPVHVVQLTFLKLLSATAKQSFTYICQNSAGWFDSTSRSYQHALRFKGSNDEEL
TQAKSPFITAVHDGCQLRRGQERTVLEIDSPSAELLPIVDVATADFGSNSQKFGFRVGRV
CFNG
NT seq
5595 nt
NT seq
+upstream
nt +downstream
nt
atggacagtttaacaaggaccaggttgcgcagaagaacacatttatttattttcatctta
attcatctaacaacggctcaaaatgctgatcccattgatgttctgcgagtgcttgggttg
tcagagaacatggagggggtgtccttggaggctggtctctgcaccagcaggaggggaacc
gaggagatggacctggcttacaagatcaaaaagatccagctcagcgctcccactaaacag
ctattccctgaatccaattttcctgaagatttctccctgatgacgacagttagggctaaa
aagggctcccagtccttcctgctttcggtttatgatgaccagggggtccagcagctcggc
cttgaagtgggtcggtcacctgtctttctgtatgaggaccagcacggacagcccactcca
gaactttatcccatcttcaagaagatcaacctggcagatggaaaatggcacagggttgct
tttagtgtgcaagacaagaccgtgagcctttacctggactgtgagaaggtagagaccctg
gatctgctccgaggggacgatgttgctgtcagcacagacggcgtcacggtttttggaaca
cggctgctggatgaagaagtttttgagggagatattcagcagctgttaattgtggaagac
ccgcaggctgctgccaactactgcataaaccacataccagactgtgactttgctctacct
tacaacagtcaagctctggaccagcaggagctctctcaacttgagtttgatgcttcagtg
caaagtgaccaaccagctgaagaaaagaaggaaccaaaagaggagaggaacagaaaaaag
aacaagaagaagagggacaaaagctctaaaggaaaacgaaaaggcaagggcaagaagggc
tccagaaagaaaaagcatgaagatgaaggtcttgaggaaggcttcctaagaacacctaca
gctgctccagagtttcagtcacagaaacccttccagcccacaggcctaccagacgttgag
accacctttaacgtcttttccacccaagtgcttgacagaaccacgacggagctgctcaca
cttaaacccgacttcacaactgaagccccctcagtggtgcctagcacgctgcccgtatca
aagttagccaaggaggagagcacgccactggagaaagcagtggtggcggagtacgatgat
ggtctttttgcacacctgtatgaagatctctccgtttccacggtgaccgtgggcccaaat
gttactgaatatgagattcttgaatatgaagatttgaaaaacgacacagagtcggagtac
gaagaatatgaaatatatgaggacggctttgactttgcggagcgggaacgagccgagact
ttaaatgttgaggctgcactcagagcagaaaaaggccaaaaaggagagcaagctattatt
gaaccgggtcttttggtgattgggccccaaggcttaccaggaccagaggggcttcctgga
ccagctggaccaacaggtcctccaggacccagaggagatccaggggacctgggtcctcca
gggcgtcctggtcttgctggggttgatgggatcccaggtcctccaggaaccatcctaatg
ataccattccactacggaggtgattcacagaagggaccagtggtgtcagcccaggaggca
caagcccatgctatcctgcagcagtccaagatgtcacttatggggcctccaggtccgctg
ggtctgacaggacgaccaggcccgatgggtgttccaggtccagctgggctcaaaggggat
cagggagagaatggccctcctggacctcgtggattgccaggccctcatggaattaatgga
aaaccaggaaagaggggacatgcaggtgtggatggaggtcggggatctccaggtgaaaca
ggagcaaagggtgacaggggctttgatggtctgccaggtctcccaggaaacaagggacac
ctaggggacagaggaagacctggtcctcaagggcctattggagagccaggcgagaaggga
tccgatggacctgttggaccaagagggcaagcaggtgaacctggtccccgaggtcttgtc
gggccacgggggccccctggctcccctggacaaccgggtatagctggtaccgatggagta
caaggttcaaagggcaaccagggaccacatggagaaataggccctccaggtcaacaagga
aatccaggaatacagggcttccatggtcctcagggtcctattggagccccaggagagaag
ggtcccccaggtaaacagggcatgcagggactcccaggcattgatggtcctccaggtcac
ccaggaagggagggacccccaggagaaaaaggcatccaaggcttgcctggaactcagggg
cctgttgggtacccgggcatccgtggagtcaagggagccgatggagttagaggtctaaag
gggagcaaaggagaaaaaggagaagatggctttcctgggcctaagggggacatgggtgtc
aagggtgacaggggtgaaaatggagcagttggttctcgtggagaggatggtccggaaggg
ccaaagggtcagacgggacctgtaggagagtcgggacaagttggagcagcaggagagaag
ggcaaactcggtgttcctggtttgccaggttacccaggaagacaaggccccaagggaaca
ctaggcttccccggtgtagccggcatcttgggagagaaaggaagaaggggtgcatctggt
cagccaggcccaggaggccaaagaggtcctaatggagcccggggtggaagaggagcaagg
gggccaaccggaaagcctggagaaaagggttctgctggacaagatgggcctccaggatct
ccaggagatcagggtcctcaaggagcacaggggcagagtggggaaccaggacctaaaggg
cctaatggcccctctggaaaggatggattaccaggccatccaggtcagagaggagaacca
gggtttcaaggcaagaatggacctcctggtcctccaggagttgttggacctcaggggaaa
tctggtgagacagggccaactggagatcgaggtcatccaggctcaccaggaccaccaggt
gagcatggtttaccaggagctgctggaaaggagggtgccaagggagatccgggcccactt
ggagtagcaggaaagagtggccccccggggctcaaaggcttcagagggagcagaggaacc
cctggtgtgacgggccctccaggtctaaagggaggagaaggcttacctggcactgcagga
actattggtgctactggtgagaggggtcctgctgggccggctggtgctatcggcccacca
ggacgaccaggcagcattggtcctgctgggccgaacggagagaaaggcgagccaggagag
aagggaaccttgggacctgctgggcatgatgggcaaccaggacctacaggactgcctggg
gttgctggatcgcctgggcctcctggggaggacggagacaagggagaactgggcacacca
ggccagaaaggcagcaaaggagacaaaggagaagctggacccccaggacctgttggtatt
caaggacctgtaggccaaccaggaccatcaggtgcagatggtgagccaggtcttcgtggg
caaatgggtgtgaacggggcaaaaggcgacgaaggaccaagggggttcaaaggaccacca
ggtccctctgggctacagggaatgccaggtccccctggtgagaaaggagaaagtggccat
gttggttcaatggggccaccgggacagcatggaccacgaggacctcagggagccattggt
gcagagggatccctaggctcacctggaggagttggccagcctggacgtgttggagagaag
ggggaggatggagaagcaggagaccccggcccagttggagagtctggccttcctggcgct
aaaggtgatgttggggaaaagggtgattctggcccccctggtgcagctgggcctcctgga
tccagagggaccccgggagaagatgggtctaaaggcaatcttggtccaattggatttcct
ggagacttaggcccccctggagagctaggcaccagtggagtcgatggggctcctggagct
aaaggagatgacggagaaccaggaaaagcaggaccgccaggagcatctggagaaccgggt
ccaacaggagctcctggtcggaggggccatattggtgccgcaggaaaagaagggaagcaa
ggcgtgaaaggaggcaaaggggctacgggagctcagggtccagtgggaaaaacaggccca
gtagggccccaaggtccaccagggaggcctggtccagaaggacttcatggtattccgggc
cctgcgggggaacaagggctaaatggaccaccaggacagacgggaccaccaggaccattg
ggtccaccaggacttccaggattgaaaggagaccctggcaacaaaggagaaaaaggtcat
ggagggttgattggcttaattggccccccaggggaacctggtgaaaagggagacagaggt
ctaccaggaagccagggtttgcaaggtgctaaaggagacgagggtatgctgggctcactt
ggtcccattggcccaccgggtccacctggactgtcaggtccagctggtgagaaaggatcg
aagggagagtcgggcgttactggtcccataggagatccaggccctgccggtcttccagga
cccccgggaccacctgcaacattcgttcaacctctgcctatttgggaggagaggcggaag
agacgaagacattcagatcaagcaacaggagcagcaccaaccagggaggatgaggaggcg
ttcctccagggtgatcaacctttggaggatgctgagggaatggaggaagtctttgctacc
ctctcatctatgaagaatgatgtggagctcataaggaagcctcttggaacatttgacagc
cccgctaggacctgcaaggagctgatgatgatccaacctgactacaaagatggggactac
tggatagatcccaaccagggctgtcacagagactccatcaaggtcttctgtaacttcact
gcttatggagagacctgtctttaccctgacaaaaggattgaactggtaaaattgtcagcg
tgggcaaaagagaaaccaggaagctggttcagccagtacaaaaagggaaaacagttctcg
tacactgacagggacgggaaccctgtgcatgtagttcagctgaccttcctgaagctttta
agtgccacagccaaacagagcttcacctatatctgtcagaattcagcaggctggtttgac
agcacctcccgctcctaccagcatgccctccgcttcaagggtagcaacgatgaggaactc
acacaagccaaaagccccttcatcacggcggtgcacgatggatgccagcttcgcagaggt
caggaaaggaccgttctagagattgactccccatcagccgagctgctgcccatcgtagat
gtggctacagcagacttcggcagcaacagccagaagtttggattccgagtcggacgagtg
tgcttcaatggttaa
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