Nothobranchius furzeri (turquoise killifish): 107378529
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Entry
107378529 CDS
T05163
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107378529 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nfu03041
]
107378529 (ddx42)
Enzymes [BR:
nfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107378529 (ddx42)
Spliceosome [BR:
nfu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
107378529 (ddx42)
Complex B
107378529 (ddx42)
Complex C
U2 SnRNP specific factors
107378529 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
107378529
NCBI-ProteinID:
XP_015804268
UniProt:
A0A8C6KAL2
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All DBs
Position
sgr05:11070931..11080394
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AA seq
957 aa
AA seq
DB search
MNWNKGGPGVKRGFGFGGFSLAGKKEEPQLPQKTHTTFGAPGSSGGYGNNQQLPSFYKIG
TKRANFDEENAYFEDDEEESSSNVDLPYIPAENSPTRQQMKSGGGSDSEDDPLDAFMAEV
EDQAAKDMRKLEEKEKKLSKGVRDDIEEEDEQEAYFRYMAENPTAGLTQEEEEDIIDYDS
DGNPIPSATKKIIMPLPPIDHSEIDYPPFEKNFYNEHEELGCLTGTQVLDLRHKLNLRVS
GAAPPKPCTSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSGKT
AAFIWPMLVHIMDQKELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVYGGG
SMWEQAKALQDGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQVRSI
ASHVRPDRQTLLFSATFRKKIERLARDILIDPIRVVQGDIGEANEDVTQVVEMLPSGMDK
WSWLTRRLVEFTSTGSVLIFVTKKANSEELATNLQQEGYSLGLLHGDMDQSERNKVISDF
KKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTN
KDTSFAGDLVRNLEGANQAVSRELMDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYKERP
GLGAESSERSSSSLLSSCSSFEGYSKPTTGAMGDRMSALKQAFQAQYKSHFVAATSGPPK
LSTKSNSSSGWTSAGSLNSVPTESANGSERHNIGAFSMPGFTSAGSLSSVPTSPTSLQQS
SPSPATPSHRESSRDRHGEGRHGDGHHRHGDRSDRHSGDDYHRDRDRHGDRDRDRHGDRD
RHSSRHSDSRNGDRRDREDRRSDRDGGDRGSGEGRDREDRRSDRDGGDRGSGEGRDRDDR
RSDRDGGDRGSGEGRDRDDRRSDRDGGDRGSGEGRDRGDDSFAVPDPPKRRKSRWDN
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaagggtggcccaggtgtcaagcgagggtttgggtttggaggtttttcc
cttgcagggaagaaagaggaacctcaacttcctcagaagactcacacaacatttggagct
ccaggatcaagtggaggatacgggaacaaccagcagctcccatcattctataaaataggg
acaaaaagagctaattttgatgaggaaaatgcgtattttgaagacgatgaagaggagtcc
agcagcaacgtggatcttccgtacattccagctgagaactcccccacacggcagcagatg
aagtcaggtggtggctctgatagcgaagatgaccccttggatgccttcatggcagaagtt
gaggaccaagcagccaaagacatgaggaaactcgaggaaaaggagaaaaagttgtccaag
ggtgttcgtgatgacattgaagaagaagatgaacaagaagcctacttccgctacatggca
gagaatcccaccgctgggctcacccaagaagaagaagaagacattattgactatgatagc
gatggaaatccaattccttctgcgaccaagaaaatcatcatgccacttcctcctattgac
cactctgagattgactatccaccatttgagaaaaacttttacaacgagcacgaggagctc
ggttgcctcactgggactcaggtgttggacttgcggcacaaactcaacttgagagtatcc
ggcgccgcccctccgaaaccttgcaccagtttcgcccactttggctttgatgagcagctg
atgcaccaaattagaaagtctgaatatactcagcctacgccgattcagtgtcagggtgtt
cctattgctctgtctggacgtgacatgattggcattgccaaaacgggcagcgggaaaacc
gctgctttcatctggcccatgctggttcacatcatggaccagaaggagctggaacctgga
gaggggcctatagcagtcattgtgtgtcccactagagagctctgtcagcagattcatgca
gaatgtaagcgttttgggaaagcctactcattgcgttctgtggccgtctatggaggaggc
agtatgtgggaacaggccaaggctttgcaggatggagcagaaattgttgtgtgcacacca
ggacgcctgattgaccatgttaagaagaaggctacatccttgcagagagtaacctacctg
gtgtttgatgaggctgatcgcatgtttgatatgggctttgaatatcaagtcagatctata
gccagccatgtccgcccagacagacaaactcttttgtttagtgctacttttcgaaagaag
attgaaaggttggcaagagacatcctgatagatcctatccgtgtggtccaaggtgacatc
ggagaggctaacgaggatgtgactcaggtggtggagatgctgcccagcgggatggataaa
tggtcttggttgacccgccggctggttgagttcacctccactggatctgtccttattttt
gtcaccaagaaggctaacagtgaggagctggctactaaccttcagcaggaaggctacagc
ctcggcctcctgcatggagacatggaccagagtgagaggaacaaggtcatcagcgacttc
aagaagaagaacttgcccgttctggttgcaactgacgtagccgcccgtggtctggacatc
ccatccatccgcactgttgtgaactatgatgtggcacgtgacatcgacacacacactcac
aggataggtcgaactggtcgtgctggggagaaaggtgtggcctacacactcctcaccaac
aaagacacctcgtttgctggagatctggtgcggaatctcgagggagccaatcaggctgtt
tctagagagctgatggatttagccatgcagaatccctggttcagaaagtcacgatttaag
ggtggcaaagggaagaagctgaacattggtggagggggtctcggttacaaggagagaccg
gggctgggggctgaaagctctgagcgcagcagtagcagcttgttgtcttcctgtagtagc
tttgaaggttacagtaagccaacaactggggcaatgggggatcgcatgtctgcattgaag
caagccttccaggctcaatataaaagccactttgtggctgcaaccagcggccctccgaag
ctcagcaccaaatctaacagctcctccggctggacgagtgccggcagcctcaactctgtg
ccaacagagtctgccaatggctcagagcggcacaatattggcgctttttcaatgcccggc
ttcaccagtgcaggctccctgagctcagtgcccaccagtccgaccagtttacagcaaagc
agcccatcacctgcaactccctcacacagagaaagctcacgagacagacatggagaggga
cgtcatggagacggtcaccatcgccacggtgacaggagtgatcggcacagtggggatgat
tatcacagagaccgggatcgtcatggagacagagatcgtgaccgccacggggaccgggat
cgccatagcagtcgccacagcgacagccgcaacggtgacaggagggacagagaagaccgg
aggagtgatagggatgggggagacagggggagcggagaagggagggacagagaggacagg
aggagtgatagggatgggggagaccgggggagcggagaagggagggacagagatgacagg
aggagtgatagggatgggggagacagggggagcggagaagggagggacagagatgacaga
aggagtgatagggatgggggagacagggggagcggagaagggagggacagaggagacgac
agctttgcagttcccgacccaccaaaacgtagaaagagtcggtgggataactaa
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