Nothobranchius furzeri (turquoise killifish): 107378708
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Entry
107378708 CDS
T05163
Symbol
arid1a
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107378708 (arid1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nfu03000
]
107378708 (arid1a)
03021 Transcription machinery [BR:
nfu03021
]
107378708 (arid1a)
03036 Chromosome and associated proteins [BR:
nfu03036
]
107378708 (arid1a)
Transcription factors [BR:
nfu03000
]
Eukaryotic type
Helix-turn-helix
ARID
107378708 (arid1a)
Transcription machinery [BR:
nfu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
107378708 (arid1a)
Chromosome and associated proteins [BR:
nfu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
107378708 (arid1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
107378708
NCBI-ProteinID:
XP_015804544
UniProt:
A0A8C6LBD1
LinkDB
All DBs
Position
sgr05:31535201..31551335
Genome browser
AA seq
2272 aa
AA seq
DB search
MAAQVASAATLNTSPPSELKKPDRVPKEDSGPGEKQSDKKQTGLDSGSPGRGELQDGTDG
GNAGGGGEPEMKNGNGNPPRVNNNTPNDSVGPEGNNHPGFAHHHGPAFPPPSYGYSHHYG
RAAFHQYGGQQSPGMAAAAGPGVQSSNMMDPYQPNSHEHGFSNHQFNNYNPFPNRTPYPG
QAYAMNSPRSAQAPTAGGQPAKQQPPPGGPTAMAGSYSNQRYNIGNPQPTSTPTLNKLLT
SPSATRGYQNYPSGDYSSQEGASKGPAEYGGSNPSWQQRSLHPSPMSPGSAGQPLARSQP
PGPMDPMGKMRGQPYGSGSPYSQQSQQGPPAGPQPGPGYPGQAYGPPAPQRYPVGMQGRS
PGGMGAMPYGPQMGAYGQPGPGGYSSQGQAPYYSQPGQTPHPGQQQTLYPQPSPGQAGRQ
SPYPGQPHPPTSAPHNQGGPAYQQPHMPPQSQGPLPGPSQGPPQSQPPYSQASAPQSSQS
PYAQQQGPPSQTPQQSSSQAPPGSQGQTNYPGSTQGPPQPPSQQQQTSSHPQQPPGHSQH
PQGQSAAYPQNTQQQAQQSPYQRFPPPQQQEISQDSFQSNAPPSTQPKPGPEDSQGRPSS
LPDLSGSIDDLPTGTEGPEGALSPGVSTSGVSSSQGEQSNPAQSPFSPHTSPHLPGIRGP
SPSPAGSPASASTPRTGPLSPANMPGTQMPPRPSSVHSDGNLHPGMSQSPMAQDRVPGFM
PRNPQMPPYGSPQSASALSPRQSSGGQIHPGMAPFQNSSMSGYGPQGGQYGPQVGYPRQP
AYGNMPNANYPGPAMGSMNPMAGQGGGPPYAGMPPGRMPPNQMGARPYGPNMGPNMPPNM
GNMPPQVGSGMCPPPGMNRKPQDPTAMQHPSSNSMLNRMPGYPNMSQGMMGSGPPYSQPM
NSMPGMMNTPGGSPYPMGPNMANNTSGMAASPEMNNKMNNKVDGSGTPKPESKSKKSNSS
TTTSEKITRLYELGPEPDRKLWVDRYLAFVEEKAMGMTNLPAVGRKPLDLFRLYMSVKEI
GGMTQVNKNKKWRDLATALNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPEIFTDN
KKNQAAKVQPPSPASLCSTAGSGSLQGPQTPQSTSSSMAEGGDLKPPTPASTPHTQMPPM
PPGSRSSVNLQDPFSDGNDPAFPRKNMTPNATYPSGMNTPDMQGRMGPYEPNKDPFSNMR
KVGEQFLPASQGPNSMVGDQQQQQPPQQQPPFSRGPPGAMGTMPMGPRQQYPYAPGYDRR
PEQGMGPEANMGSGAPQPNPMMPANADAGMYSPNRFPPQQPRHDSYGNQYPGQGTPSTGS
YPNQQPGSYPQQSYKRSIEGVFPPSKRHETEYSGSFPGGQQAPQQQQQGGASAPPSGQQE
SFNQYGVGSGPYPGPDRRPPGPGNQFPFPFGRERMQGASGPNAQPNMPPQMMQPGAEGAQ
GGMWQGPRDINYHNYPNRQGGPGGQPHGPGYPGMNRSEDMMSSEQRMNHDGQWGGQIGPR
QPSYGPAGPGQPMPRSVQSNYQPPQGVQNHIPQVPSPASIPRPLENRTSPNKSPFIHGVM
KMQKAGPPVPASHVVPPPVQSPLIRRDMPFPPGSVEASLPVLKPRRRLTLKEIGTPEAWR
VMMSLKSGLLAESTWALDTINILLYDDNSIATFDLNTLPGLLELVVEYFRRCLIEIFGIL
REYEVGDPGQRTLLDPDALKQDLDSVEVDEQHLEDMEQEEADDEDEEETVRPPHVKEEEH
QVQCSRGRDGKTEDDERKSKVSLSDQAASSLCLPAHDKPKQASKFDKFPLKVVRKKDPFV
AAQSKNHGKVQEFDSGLLHWSAGGGDSTEHIQTLFEPRKDFLESRERIPLSTALLMRRVP
EGDVRENGLPTEEENTKPEEEEEGQKQTDLEKNGSVGSSDEERQSDSDAKLAVGGPTSNQ
ENRPILSSGSVLAQKAQPFGTILEDEPHSKDEGPLVTLATWQDSLARRCVCVSNIIRSLS
FVPGNDHEMSKHPGLLLMLGRLILLHHWHPERKQAPLTYEKDEDSEEGMGQKDEWWWDCL
ELLRENTLVTLANISGQLDLSLYSESICLPLLDGLLHWAVCPSAEAQDPFPTLGPHSSLS
PQRLVLETLSKLSIQDNNVDLILATPPFGRLEKLYGNLVRLIGDRKVAVCREMAVVLLAN
LAQGDTMAARAIAVQKGSVGNLLGFLEDSLAATQLQQSQSSLLHLQGMPFEPTSPDMMRR
AARALLALSKVEENHSEFTLHESRLLDLSVSPLMNSLVSHVICDVLFLIGQS
NT seq
6819 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccagcgccgccactcttaacactagcccgccttctgaacttaaa
aagccggatcgagtgccaaaggaagactcgggtccgggagagaagcagtccgacaaaaag
cagacgggtttggacagcggatcgccgggccggggggagctgcaggacggaactgatggt
ggaaatgcagggggaggaggggaacctgagatgaagaacgggaatgggaacccgcccagg
gtgaacaataatacgccgaatgactccgtaggaccggagggaaataaccatcccggtttt
gcgcatcaccacggtcccgctttccccccaccttcctacggatacagtcatcactacggt
cgggccgcttttcatcaatatggcggacaacaaagccctggcatggcagctgctgcgggt
ccgggtgtgcagtcgagcaacatgatggacccgtatcaacccaattcacacgaacatggc
ttttcgaaccaccagtttaataattacaatccattcccgaacaggactccgtatcccggc
caggcgtacgccatgaactctcctcgcagcgctcaagcgccgacagctggggggcagcca
gctaagcaacagccaccaccgggaggacccacggcgatggctggatcttacagtaatcag
agatataacattgggaaccctcaaccaacatccacgccgactctcaacaagctcctaact
tcacccagcgctacgaggggttaccaaaactacccgtctggcgactacagtagccaggaa
ggagctagtaagggaccagcggagtacggagggagcaacccgagttggcaacaaagaagc
cttcacccgtcgccaatgagcccgggaagtgctggacaaccgctcgctagaagccagcct
cccggtcccatggatcctatgggaaaaatgagagggcagccatatggatcaggcagtcca
tacagccagcagtcacagcaggggcctcctgcaggtcctcaacctgggccggggtaccca
ggtcaggcttatggccccccagctcctcaacgatacccagtgggaatgcaagggcgttcc
ccaggaggcatgggtgctatgccttatggtccacagatgggagcgtacggacagccggga
ccaggggggtatagctctcagggccaggcaccgtattacagccagccaggccagactcct
cacccaggtcagcagcaaaccctttacccccagccctcacctggacaagctggaaggcag
tcgccttacccggggcagccccaccctcccacttcagctccacacaaccaaggaggacca
gcctatcaacagccccacatgcccccacagtctcaggggccactgccaggcccgtctcaa
ggccccccccagtctcagccgccctactctcaagcgtcagcgccacagtccagccagtct
ccctacgcccagcagcaggggcctcccagtcagaccccgcaacagtcaagttcccaggct
ccccccggatctcaaggccaaaccaactacccagggtccacacagggccccccgcagccc
ccctcacagcaacagcagacgtcgtctcatccacagcagcccccgggacacagccaacac
ccacaggggcagtctgcagcgtaccctcagaacacccagcagcaagcacagcagtcacct
tatcagcgttttcctcctccacagcagcaggagatctcccaggactcgtttcagtccaac
gctcctccatccacccagcccaaacctggtccagaggacagtcagggccgcccatccagc
cttccggacctatcagggtccattgacgacctgcccacaggcacagaggggccagagggc
gccctgagtcccggcgtgagcacatctggtgtgtcgagcagccagggcgagcagagtaac
cccgctcagtcgcccttctcccctcacacatccccccatctcccaggcatccgagggccc
tctccttcccctgccggctccccagccagcgccagcacgccccgaacaggaccactatca
cccgccaacatgccagggacccagatgcctcccagaccgtcgagcgtgcactccgatggg
aacctgcaccccggcatgagccagtcccccatggcgcaggacagagttccagggttcatg
cccagaaacccgcagatgcccccctatggctccccccagtcagcctctgcgctgtcgccc
cgccagtcctccggaggacagattcatcctgggatggcgccatttcagaacagctctatg
agtggctatgggccgcagggaggacagtacggcccccaagtgggttacccccggcagcct
gcttatggaaacatgcccaacgccaactacccaggaccagcaatgggctccatgaacccc
atggcaggacagggtggagggccgccatacgctggcatgcctccaggaaggatgcctcct
aatcagatgggcgcacgtccttacggtcccaacatggggccgaacatgcctcctaacatg
ggcaacatgcctccacaggtaggctcaggaatgtgcccgcctccaggaatgaacaggaag
ccccaggacccgacggccatgcagcatccttcctccaactccatgctgaacaggatgccc
ggttatcccaatatgtctcaaggcatgatgggttctggtccaccatacagccaaccaatg
aacagcatgcctggaatgatgaacactccaggtggctcaccctatcccatggggccaaac
atggccaacaacacaagcgggatggctgcaagtccagagatgaacaataagatgaataac
aaggtggatggcagtggaactcccaagccagaatccaaatctaagaagtccaactcttcc
acgaccacaagtgagaagatcacacgcctgtatgagctgggaccagagcctgacaggaag
ctttgggtcgaccgttacttggctttcgttgaagagaaagccatgggcatgaccaacctg
ccggccgtcggacgcaagcccctcgacctcttccggttgtatatgtccgtgaaggagatc
gggggaatgacgcaggtgaataagaataagaagtggcgtgatctggccactgctctgaat
gtgggcacgtccagcagtgctgccagttctttgaaaaaacagtacatccagtgtctgtac
gcctttgagtgtaaaattgagcgtggtgaagaccctccccctgagattttcacagacaac
aagaagaaccaggcggctaaggtgcagccaccctcaccagcgtccctctgctccacagct
gggtcgggctctctgcagggtcctcagacaccccagtccacgagcagttccatggctgag
gggggggaccttaaaccgcccactccagcctccactcctcacacacaaatgccccccatg
ccacctgggtccaggagcagcgtgaacctgcaggatcccttctccgatggcaacgaccct
gccttccccaggaagaacatgacccccaacgcaacctacccgtctggcatgaacacaccg
gacatgcaaggccgcatgggaccctacgaacccaacaaggacccctttagtaacatgcgg
aaagtgggggagcagtttctacctgccagccagggtcccaacagcatggtgggtgaccag
cagcagcagcagccaccacagcaacagcctcctttcagcagaggaccacctggggccatg
ggcacaatgccgatggggccccggcagcagtatccttatgcaccaggctacgacaggaga
ccggagcaggggatgggccccgaggctaacatgggatcaggtgctcctcagccaaacccg
atgatgcccgccaacgccgacgctgggatgtattcaccaaaccgcttcccgccgcagcag
ccacggcatgattcctatggtaatcagtatcccgggcaggggacgccctctactggctcc
tacccaaaccagcagcctggaagttaccctcagcagagttacaaacgttccatagaagga
gtgttccctccatcaaaacgtcatgagacggagtacagcggttccttccccggagggcag
caagcaccacagcagcagcagcaaggtggcgcctctgcacctccttcgggacagcaggag
tcattcaatcagtacggcgtagggagcgggccgtaccctggccctgaccgccgtcccccc
ggacccggcaatcaattcccatttccctttggtcgtgaacgaatgcaaggagcctccggg
ccaaatgcgcagcccaacatgccccctcagatgatgcagccaggtgctgagggcgctcag
ggcggcatgtggcaagggcctcgagacattaactatcacaactaccctaaccggcagggt
gggcctggtggccaaccacacggtcccgggtatcctggtatgaaccgctcagaggatatg
atgtcatcagaacaacgcatgaatcacgatggccagtgggggggtcaaataggccctcgg
cagccttcttacggtccagctgggcctggacagcctatgccccgttcagttcagtccaac
taccagccccctcagggtgtgcagaaccacattccacaggtgcccagcccggcgtccata
ccccgccccctggaaaaccggacatcgcctaataaatctcctttcatccacggagtaatg
aagatgcagaaggccggacccccggtgcctgcatcccacgtagttccgcctcctgtgcag
tcgcctctaataaggagagacatgccttttccccctggctctgtggaagcttcacttcct
gttctcaaaccacgacgaagactcaccttgaaagaaatcggaactccagaggcctggaga
gtcatgatgtcgttaaagtctggtttactggctgaaagtacatgggctctagataccatc
aacatcctcctgtatgatgacaacagcatcgccaccttcgatctcaacacgctgcctggc
ctgctggagttggtggttgagtatttcaggcgttgcctcattgaaatctttggcattctg
cgagagtatgaagttggagaccctggccagcggacgctgcttgatccggatgccttgaag
caagacttggacagcgtggaagtagatgaacaacatcttgaggatatggaacaggaggaa
gcggatgatgaagatgaggaggaaactgtgcgaccgcctcatgtgaaagaggaggagcat
caagtgcagtgctctcggggtcgagatgggaagacggaagacgacgaaaggaagagcaaa
gtttctttatctgaccaggcggcttcatcgctatgcctacctgcccatgacaaacccaaa
caggccagcaagtttgacaagtttcccctgaaggtggtacgaaagaaggacccgtttgtg
gctgcccagtccaaaaatcacggcaaagtgcaagagtttgacagtgggctgcttcactgg
agcgctggaggtggagactcaacagaacacatccagactctctttgagccacgcaaagac
ttcttggaatcacgagaacgaatacctttgtctacagccctactgatgcggcgggtccca
gaaggggacgtacgggaaaacggtttacctactgaggaggaaaatacgaaacctgaagaa
gaagaagagggacaaaaacagacagacttggagaaaaatggctccgtagggagcagcgac
gaggagaggcaatcagattcagacgcaaagcttgctgtaggaggtcctacgagtaatcag
gagaatagacccattctttcctctggaagtgttttagcccaaaaggcacagccgtttggt
accatattggaggatgagccccacagtaaggatgaagggccgcttgttacactggccacc
tggcaggattcattagcgcgtcgctgcgtttgtgtctcaaatattatccgcagcctctcc
tttgtgccgggaaatgaccacgaaatgtccaaacaccctgggctgctgctaatgctcggg
cgattgattcttttgcaccactggcaccctgagcgcaaacaggcccccctcacctatgaa
aaagacgaggattcagaagagggaatgggccagaaggatgagtggtggtgggactgcttg
gagcttctgagagaaaacacgttggtcacattggcaaacatttcaggccaactagacctc
tctctctactcagaaagcatctgcttgcccctgctggatggccttctgcactgggcagtc
tgtccttcagcagaggcccaggacccgttccctaccctgggaccccatagttctttgtcg
ccccagagactggttctggagacgttaagcaagctaagcatccaagacaacaacgtggac
ctcatcttggccacgccacccttcggtcgattagagaagctctatgggaacctggtgcgg
ttaatcggtgacaggaaggttgcggtctgcagggagatggccgtagttttacttgccaac
ttggcccagggtgacacgatggcagcccgagctatcgctgttcagaaaggcagtgtgggc
aatttgctcggcttcctggaagacagtctggctgccacacagcttcaacagagccagagc
tctcttctgcacctacaaggaatgcccttcgagcccaccagcccggacatgatgcggcga
gctgcccgggccctgctcgccctatccaaggtggaggagaaccactcagagttcacacta
cacgagtcccgactactcgacctgtccgtgtctccgctaatgaactcgctggtgtctcat
gttatctgtgatgtactctttttgatcggccagtcatga
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integrated database retrieval system
