Nothobranchius furzeri (turquoise killifish): 107379781
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Entry
107379781 CDS
T05163
Symbol
ercc2
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPD subunit isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03022
Basal transcription factors
nfu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107379781 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
107379781 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nfu03021
]
107379781 (ercc2)
03036 Chromosome and associated proteins [BR:
nfu03036
]
107379781 (ercc2)
03400 DNA repair and recombination proteins [BR:
nfu03400
]
107379781 (ercc2)
Enzymes [BR:
nfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107379781 (ercc2)
Transcription machinery [BR:
nfu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
107379781 (ercc2)
Chromosome and associated proteins [BR:
nfu03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
107379781 (ercc2)
DNA repair and recombination proteins [BR:
nfu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
107379781 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
Motif
Other DBs
NCBI-GeneID:
107379781
NCBI-ProteinID:
XP_015806179
UniProt:
A0A1A8ULZ1
LinkDB
All DBs
Position
sgr06:791303..815658
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNIDGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
RAFPLEVTKLIYCSRTVPEIEKVVEELRKLMEFYAKETEEVNNFLALALSSRKNLCIHPE
VSSLRFGKEVDGKCHSLTASYVRAQRHGNPNQPVCRFYEEFDAVGRQVPLPAGVYNLDDL
KDLGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID
NVCIDSMSVNITRRTLDRCQNNVDTLQNTIQRIKETDAAKLREEYRRLVEGLKEANVARE
TDVYLANPVLPDEILKEAVPGSIRTAEHFVGFLRRFLEYLKSRLRVQHVVQESAPQFLKD
IFDKVCIDRKPLRFCAERLQSLLRTLEITDISDFSAVTLISNFATLVSTYSQGFTIIIEP
FEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVIITSGTLSPVDIYPRILDFRPVTMAS
FTMTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGNLLLEMSAVVPDGIVAFFT
SYVYMENIVASWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHINDGSLNLTVDEAVQLSKHF
LRQMAQPFSQVDQLGLSLLTLEQLESPEMLKKIAQIAHQT
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgaacatcgacggtctgttggtgtattttccttatgattacatttatccggag
cagtactcctacatgctggagctgaagaggactctagatgctaagggtcatggagttctg
gagatgccatcagggaccgggaagaccatctctctgctgtcgctcatcgttgcctaccag
agggcttttcctttggaagtgaccaagttgatttactgctccagaacggttcctgagatc
gagaaagtggtggaggagctgaggaagctgatggagttttatgccaaagaaactgaagaa
gtcaacaacttcctggctctggcgctttcttccagaaaaaacctgtgcatccaccccgag
gtgagctccctacgctttgggaaggaggttgatgggaaatgccacagtctgacagcatca
tatgttcgtgctcaacgccacggtaaccccaaccagcctgtgtgtcgcttctatgaggag
tttgatgcagtcggacgtcaggttcctcttcctgcaggcgtctacaacctggatgactta
aaggacctcggcaggaggaaaggctggtgtccgtactatctggctcgttattcaattctg
cacgctaacatcgtcgtgtacagctaccactacctgctggacccaaagatcgctgacctg
gtgtccaaggagctcgccaagaaatctgtggtggtttttgatgaagctcataatatcgac
aacgtctgcatcgactccatgagtgtgaacataaccagacggacgctggaccgctgtcag
aacaacgtggacacgctccagaacacaatacagcggataaaggagacggatgctgctaag
ctgagggaggagtacaggcggctggtggaggggctgaaggaggccaacgttgcccgggaa
acagacgtttacctggcaaacccagtgttacctgatgaaatcctgaaagaggcggttcct
ggttccatccggaccgccgagcattttgttgggtttttgcgacgttttctggagtattta
aagtcccgcctgcgagtgcaacacgtggtgcaggagagcgccccgcagttcctcaaagac
atctttgacaaagtctgcatcgaccgcaagcccctcaggttttgtgcagagaggctgcag
tcgctactgcgaactctggagatcacggacatctcggacttctcagccgttacgctcatc
tctaactttgcgactcttgtcagcacctacagccaaggttttaccatcatcatcgagcct
tttgaggacagaactcccaccatcgctaacccggtgctgcacttcagttgcatggaccct
tccatcgccatcaaacctgtttttcaaaggtttcagtccgtcatcatcacatcggggacc
ctctcaccggtggacatctatcccagaatcctggactttcgtccagttaccatggcgtcc
ttcaccatgacgctggcccggacctgcctctgtcctctgatcgttgggagagggaatgac
caggtggctctgagctcaaagtttgagaccagagaagactttgctgtaatccgtaactac
ggtaacctcctcctggagatgtctgcagtggtccctgatgggatcgttgcgttttttacc
agctacgtctacatggagaacatcgtggcgtcctggtacgaacagggaatcctggagaac
atccagaggaacaaactgatcttcattgagacgcaggacgctgcagagacgagcatggct
ctggagaaataccaagaggcatgtgaaaacggcagaggagccatccttctgtccgtggcc
agggggaaggtgtcggagggcatcgattttgtccaccattttgggcgtgcagtgatcatg
tttggagtcccgtatgtttacacgcagagccgcatcctaaaggcccgtctggagtatctc
cgggatcagttccagatccgagagaacgacttcctgacgttcgatgcgatgcgtcacgcc
gcccagtgcgtcggccgagccatcagagggaagactgactacggcctcatgatcttcgcc
gacaagcgatacgctcgagcggacaaacgggggaagctccctcgctggattcaggagcac
atcaacgacggcagcttgaacctgacggtggacgaggccgtccagctgtccaaacacttc
ctgcgtcagatggctcagcccttcagccaggtggaccagctgggtttgtctctgctgact
ctggaacagctggagtcgcccgagatgctgaagaaaatcgctcagatcgctcatcagact
taa
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