Nothobranchius furzeri (turquoise killifish): 107380170
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Entry
107380170 CDS
T05163
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107380170 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107380170 (ddx6)
03036 Chromosome and associated proteins [BR:
nfu03036
]
107380170 (ddx6)
Enzymes [BR:
nfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107380170 (ddx6)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
107380170 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
107380170 (ddx6)
Chromosome and associated proteins [BR:
nfu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
107380170 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ResIII
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
107380170
NCBI-ProteinID:
XP_015806763
UniProt:
A0A1A8B8R6
LinkDB
All DBs
Position
sgr06:16420961..16430495
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AA seq
481 aa
AA seq
DB search
MSSNRTENPVILGLSNQNGQLRGSVKPAGAPGGGGGGPQQQQLNQMKGTINGNSQPAPPT
NAIIKPGDDWKKNLKLPPKDTRIKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPI
QEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKRDCLQALVIVPTRELALQVSQ
ICIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVGQVQM
IVLDEADKLLSQDFVVMMEEMLGFLPRQRQILLYSATFPLSVQKFMNAHLQKPYEINLME
ELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCF
YIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRI
GRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPGIIDKSLYVAEYHSEGGEEVK
Q
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaataggacagagaacccagtgattctgggcttgtcaaaccagaacggacag
ctaagaggttcagtaaaacctgctggagctccaggtggaggtggcggaggtcctcaacag
cagcagttgaaccagatgaagggcacaatcaatggaaactcccagccagcccctccaaca
aacgctattattaagcctggagacgactggaagaaaaatttgaaattgcccccaaaagat
acgaggattaaaacttcggatgtgactgcaactaaaggcaatgagtttgaagattattgt
ctaaagcgggagctactcatgggaatctttgagatgggctgggagaagccatctccaatt
caggaggaaagcattcccatcgcactgtcagggagggatattttggccagagccaagaac
ggcacaggaaagagtggagcctacctcattcctttactggaacgcatcgacctgaagagg
gactgtttacaagctttggtcatcgtgcccaccagagaattggcactgcaagtaagccaa
atatgtatccaggtcagcaaacacatggggggcgtgaaggtgatggcgaccactggtgga
accaacctccgcgatgacatcatgaggcttgatgaaacggtacacgtggttatcgctact
cctgggagaatcctagacctcatcaagaaaggagttgccaaagtcggtcaagtgcagatg
atcgttttggatgaagcagacaagctcctgtctcaggactttgtggttatgatggaggag
atgctgggcttcctgcccagacagaggcagatcttactttattctgccacctttcctctc
agtgtgcagaagtttatgaacgcacacctgcagaaaccttatgagatcaacctaatggag
gagctgactttgaagggtgtgactcagtattatgcttatgtgactgaaaggcagaaggtc
cattgcctcaacactttgttttccaggctccagatcaaccagtctataatcttctgcaac
tcctctcagagagtggagcttctcgccaagaagatctcccagcttggttattcatgtttc
tacatccatgccaagatgagacaggaacatcgtaatcgcgtgttccacgactttagaaac
ggcctctgccggaatctcgtctgcactgacctcttcacaagaggaattgacattcaagct
gtgaatgttgtgatcaattttgattttcccaagctgggagaaacgtaccttcatcgcatc
ggtcgatctggtcgttttggacacctgggtctcgccatcaacctcatcacgtacgacgat
cgcttcaaccttaaagggatcgaggagcagctcggaacggagatcaagcccatccctgga
atcatcgacaagagcttgtatgtggcggagtaccacagcgagggtggtgaagaagtcaag
cagtga
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